doseSim: doseSim
In GuangchuangYu/DOSE: Disease Ontology Semantic and Enrichment analysis
doseSim R Documentation
doseSim
Description
measuring similarities between two DO term vectors.
Usage
doseSim(DOID1, DOID2, measure = "Wang", ont = "HDO")
doSim(DOID1, DOID2, measure = "Wang", ont = "HDO")
Arguments
DOID1
DO term, MPO term or HPO term vector
DOID2
DO term, MPO term or HPO term vector
measure
one of "Wang", "Resnik", "Rel", "Jiang", "Lin", and "TCSS".
ont
one of "HDO", "HPO" and "MPO"
Details
provide two term vectors, this function will calculate their similarities.
Value
score matrix
Author(s)
Guangchuang Yu https://yulab-smu.top
GuangchuangYu/DOSE documentation built on Oct. 31, 2024, 9:15 a.m.
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| doseSim | R Documentation |
doseSim
Description
measuring similarities between two DO term vectors.
Usage
doseSim(DOID1, DOID2, measure = "Wang", ont = "HDO")
doSim(DOID1, DOID2, measure = "Wang", ont = "HDO")
Arguments
DOID1 |
DO term, MPO term or HPO term vector |
DOID2 |
DO term, MPO term or HPO term vector |
measure |
one of "Wang", "Resnik", "Rel", "Jiang", "Lin", and "TCSS". |
ont |
one of "HDO", "HPO" and "MPO" |
Details
provide two term vectors, this function will calculate their similarities.
Value
score matrix
Author(s)
Guangchuang Yu https://yulab-smu.top
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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