NEWS.md

In GuangchuangYu/seqmagick: Sequence Manipulation Utilities

seqmagick 0.1.7

• clw_read() and sth_read() to parse CLUSTAL and STOCKHOLM outputs (2023-12-19, Tue)
• mega_read() to parse various file types of MEGA sequence alignment (2023-12-18, Mon)

seqmagick 0.1.6

• gb_read() to parse 'GenBank' file (2023-06-27, Tue)

seqmagick 0.1.2

• suggest instead of import muscle, GenomicAlignments, GenomicRanges, IRanges and Rsamtools (2019-12-18, Wed)

seqmagick 0.1.1

• cran initial release (2019-12-17, Tue)

seqmagick 0.0.9

• add examples to function documents (2019-12-11, Wed)
• change default type="auto" for fa_read (2019-12-09, Mon)

seqmagick 0.0.8

• submit to CRAN (2019-12-03, Tue)

seqmagick 0.0.7

• bam2DNAStringSet function (2016-12-28, Wed)

seqmagick 0.0.6

• bug fixed of phy_read for sequential format (2016-12-14, Wed)

seqmagick 0.0.5

• replaceInside (2016-09-26, Mon)
• download_genbank for downloading sequence from genbank by accession number (2016-07-28, Thu)

seqmagick 0.0.4

• fa_rename & bs_rename (2016-07-22, Fri)

seqmagick 0.0.3

• phy_write, phy_read, fas2phy, phy2fas (2016-06-28, Tue)

seqmagick 0.0.2

• add vignette (2016-06-20, Mon)
• bs_align: sequence alignment (2016-06-20, Mon)
• bs_hamming: hamming distance of sequences (2016-06-15, Wed)
• bs_filter: sequence filter for BStringSet object (2016-06-15, Wed)

seqmagick 0.0.1

• fa_read: read fasta file (2016-06-15, Wed)
• fa_consensus: consensus sequence of aligned fasta sequences (2016-06-15, Wed)
• fa_to_interleaved & fa_to_sequential: fasta format conversion (2016-06-15, Wed)
• fa_combine: combine 2 fasta file (2016-06-15, Wed)
• fa_filter: fasta filter (2016-06-09, Thu)
• fa_write: output fasta file to interleaved or sequential format (2016-06-09, Thu)

GuangchuangYu/seqmagick documentation built on Feb. 9, 2024, 3:06 a.m.