In GuangchuangYu/treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

treeio: Base classes and functions for phylogenetic tree input and output

#library("txtplot")
library("badger")
library("ypages")

library("yulab.utils")

r badge_bioc_release("treeio", "green") r badge_devel("guangchuangyu/treeio", "green")

r badge_bioc_download("treeio", "total", "blue") r badge_bioc_download("treeio", "month", "blue") r badge_bioc_download_rank("treeio")

cat(packageDescription('treeio')$Description)

Visit https://yulab-smu.top/treedata-book/ for details.

r badger::badge_custom("follow me on", "WeChat", "green", "https://yulab-smu.top/images/biobabble.jpg")

:writing_hand: Authors

Guangchuang YU

School of Basic Medical Sciences, Southern Medical University

https://yulab-smu.top

If you use r Biocpkg('treeio') in published research, please cite:

• LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, BR Jones, T Bradley, H Zhu, Y Guan, Y Jiang, G Yu^*^. treeio: an R package for phylogenetic tree input and output with richly annotated and associated data. Molecular Biology and Evolution. 2020, 37(2):599-603. doi: 10.1093/molbev/msz240.

:arrow_double_down: Installation

Get the released version from Bioconductor:

## try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
## BiocManager::install("BiocUpgrade") ## you may need this
BiocManager::install("treeio")

Or the development version from github:

## install.packages("devtools")
devtools::install_github("YuLab-SMU/treeio")

:sparkling_heart: Contributing

We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.

:houses: Package Affiliations

The treeio package is a part of the Bioconductor and rOpenSci projects.

| | | |:-------------------------------------------------------------------------------------------------------:|:----------------------------------------------------------------------------------------------:|

GuangchuangYu/treeio documentation built on April 12, 2024, 5:25 a.m.