R/ui_module.R
In HIDAP/fbdesign: Creates a fieldbook
Defines functions
design_conditional_panels
ui_fieldbook
Documented in
ui_fieldbook
design_choices <- c(
"Unreplicated Design with No Randomization (UNDR)" = "UNDR",
"Randomized Complete Block Design (RCBD)" = "RCBD",
"Completely Randomized Design (CRD)" = "CRD",
"Augmented Block Design (ABD)" = "ABD",
"Latin Square Design (LSD)" = "LSD",
"Split Plot with Plots in CRD (SPCRD)" = "SPCRD",
"Split Plot with Plots in RCBD (SPRCBD)" = "SPRCBD",
"Split Plot with Plots in LSD (SPLSD)" = "SPLSD",
"Strip Plot Design (STRIP)" = "STRIP",
"Factorial Two-Way Design in CRD (F2CRD)" = "F2CRD",
"Factorial Two-Way Design in RCBD (F2RCBD)" = "F2RCBD",
# "Balanced Incomplete Block Design (BIBD)" = "BIBD",
# "Graeco-Latin Design (GLD)" = "GLD",
# "Youden Design (YD)" = "YD",
# "Cyclic Design (CD)" = "CD",
# "Lattice Design (LD)" = "LD" ,
"Alpha Design (AD)" = "AD" #,
# #"Augmented Partially Replicated Design (APRD)" = "APRD",
# #"Factorial Design (F2SPPD)" = "F2SPPD",
# #"North Carolina Design I" = "NCI",
# #"North Carolina Design II" = "NCII",
# #"North Carolina Design III" = "NCIII"
)
design_conditional_panels <- function(){
list(
shiny::conditionalPanel(
"input.designFieldbook == 'RCBD' |
input.designFieldbook == 'CRD' |
input.designFieldbook == 'F2CRD' |
input.designFieldbook == 'F2RCBD' |
input.designFieldbook == 'ABD' |
input.designFieldbook == 'DAU' |
input.designFieldbook == 'AD' |
input.designFieldbook == 'SPCRD'|
input.designFieldbook == 'SPRCBD'|
input.designFieldbook == 'SPLSD'|
input.designFieldbook == 'STRIP'",
# TODO: ab - factorial, split
shiny::selectInput("designFieldbook_r", "Replications (r):", 2:100, 2 )
),
shiny::conditionalPanel(
"input.designFieldbook == 'SPCRD' |
input.designFieldbook == 'SPRCBD'|
input.designFieldbook == 'F2CRD' |
input.designFieldbook == 'F2RCBD'|
input.designFieldbook == 'SPLSD'|
input.designFieldbook == 'STRIP'
",
#shiny::selectInput("designFieldbook_r", "Replications (r):", 1:5, 2 ),
textInput(inputId = "factor_name", label = "Enter Additional Factor Name",""),
br(),
textInput(inputId = "factor_lvl1", label = "First Level for Additional Factor",value = ""),
textInput(inputId = "factor_lvl2", label = "Second Level for Additional Factor",value = ""),
textInput(inputId = "factor_lvl3", label = "Third Level for Additional Factor",value = "")
),
shiny::conditionalPanel(
"input.designFieldbook == 'ABD'", # TODO: ab - factorial, split
infoBox(title = "IMPORTANT NOTE", subtitle = "Check if your material list have an 'x' mark in Is_control column.
Otherwise, Augmented Design does not work.",
icon = icon("bullhorn"), color = "blue", fill = TRUE, width = NULL)
),
shiny::conditionalPanel(
"input.designFieldbook == 'LD'", # TODO: ab - factorial, split
shiny::selectInput("designFieldbook_r", "Replications (r):", 2:100, 2 )
),
shiny::conditionalPanel(
"input.designFieldbook == 'BIBD'",
shiny::selectInput("designFieldbook_maxR", "Repetition maximum (k):", 3:100, 20 )
) ,
shiny::conditionalPanel(
"input.designFieldbook == 'AD' |
input.designFieldbook == 'BIBD'",
# TODO do server side checking of permitted combinations (based on number of treatments)
# trt = k * s
# s = number of blocks
# k = size of block (max is trt)
#
# r = 2: k <= s
# r = 3: s odd; k <= s
# r = 3: s even; k <= (s - 1)
# r = 4: s odd but not multiple of 3; k <= s
#shiny::selectInput("designFieldbook_r", "Replications (r):", 2:6000, 2 ),
shiny::selectInput("designFieldbook_k", "Block size (k):", 2:100, 4 )
),
shiny::conditionalPanel(
"input.designFieldbook == 'AD'", # TODO: ab - factorial, split
fluidRow(
shiny::wellPanel(
shiny::HTML("<b>ALPHA CONDITION:</b>"),
textOutput("alphaMessage")
)
)
),
# shiny::conditionalPanel(
# "input.designFieldbook == 'CD'",
# # TODO do server side checking of permitted combinations (based on number of treatments)
# # number of treatments 6:30
# shiny::selectInput("designFieldbook_r", "Replications (r):", 2:10, 2 ),
# shiny::selectInput("designFieldbook_k", "Block size (k):", 2:10,3 )
# ),
# shiny::conditionalPanel(
# "input.designFieldbook == 'LSD' |
# input.designFieldbook == 'RCBD' |
# input.designFieldbook == 'SPPD' |
# input.designFieldbook == 'BIBD'
# "#,
# #shiny::checkboxInput("designFieldbook_first", "Randomize first repetition", TRUE )
# )
# ,
shiny::conditionalPanel(
"input.designFieldbook == 'RCBD'"
# shiny::checkboxInput("designFieldbook_cont", "Continuous numbering of plots", FALSE)
)
)
}
#' shiny UI element
#'
#' returns a re-usable user interface element
#'
#' @author Reinhard Simon
#' @param type of ui Element; default is a tab in a shiny dashboard
#' @param title display title
#' @param name a reference name
#' @export
################## Begin Simple Modules
ui_fieldbook <- function(type="tab",title="Design Fieldbook",name="phenotype_fieldbook_design"){
#############
shinydashboard::tabItem(tabName = name,
shinyjs::useShinyjs(),
tabsetPanel( #Begin Master tabSetPanel
tabPanel("Standart Modules",icon = icon("tag", lib = "glyphicon"),
br(),
shiny::wellPanel(
shiny::HTML("<b>Fieldbook identifiers:</b>"),
shiny::textOutput("fbDesign_id")
),
fluidRow(
box(
title = "Fieldbook Design", status = "primary", solidHeader = TRUE,
collapsible = TRUE, width = 12,
#shiny::tabsetPanel(# id = "fbDesignNav",
shinydashboard::tabBox(id = "fbDesignNav", height = NULL, width = 12,
shiny::tabPanel("Crop & Location", value = "crop", icon = shiny::icon("leaf"),
br(),
fluidRow(
column(width = 6,
# box(
# title = "Step: 1", status = "warning", solidHeader = TRUE, collapsible = TRUE, width = NULL,height = NULL,
shiny::selectInput("designFieldbook_crop", "Crop", crops()),
shiny::uiOutput("fbDesign_factor2", inline = TRUE),
shiny::uiOutput("fbDesign_variables", inline = TRUE),
shiny::dateRangeInput("fbDesign_project_time_line", "Date of Experiment", start = Sys.Date() - 2,
end = Sys.Date() + 20, startview = "year",format = "dd/mm/yyyy"),
#shiny::uiOutput("fbDesign_country", inline = TRUE, width = 500),#country
#shiny::selectizeInput("fbDesign_country", inline = TRUE, width = 500),#country
shiny::selectizeInput("fbDesign_countryTrial", label = "Field Country:",
choices = country(), selected = 1, multiple = FALSE),
shiny::uiOutput("fbDesign_countrySite", inline = TRUE, width = 500), #,#locality
selectInput('fbDesign_nExp', 'Experiment number', c("-",paste("exp",1:100,sep="")), selectize=TRUE)
# )
# shiny::tabPanel("Project", value = "project", icon = shiny::icon("book"),
# #shiny::uiOutput("fbDesign_project", inline = TRUE),
# shiny::textInput("fbDesign_project_name", "Project name"),
# shiny::textInput("fbDesign_project_objective", "Project objective"),
# #shiny::textInput("fbDesign_comments", "Project comments"),
# shiny::dateRangeInput("fbDesign_project_time_line", "Date range")
#
# ),
# shiny::tabPanel("Plants", value = "plants", icon = shiny::icon("star"),
# shiny::uiOutput("designFieldbook_genotypes", inline = TRUE)
# ),
)
)
),
shiny::tabPanel("Material List", value = "plants", icon = shiny::icon("list-alt"),
br(),
# fluidRow(
# column(width = 6,
# box(
# title = "Step: 2", status = "warning", solidHeader = TRUE, collapsible = TRUE, width = NULL,
#shiny::uiOutput("designFieldbook_genotypes", inline = TRUE),
h4("Define Genotypes",style = "font-family: 'Arial', cursive;
font-weight: 500; line-height: 1.1;
color: #4d3a7d;"),
radioButtons("select_import", label = h4("Select Type of Import Material List"),
choices = c("Local List", "Template"),
selected = "Local List"),
br(),
conditionalPanel(
condition = "input.select_import == 'Local List'",
shiny::uiOutput("fbDesign_selmlist"),
shiny::actionButton("fdesign_list_refresh","Refresh List"),
br()#,
),
conditionalPanel(
condition = "input.select_import == 'Template'",
downloadButton(outputId = "fbDesign_mlistExport", label = "Material List Template"),
fileInput(inputId = 'file',label = 'Upload material list file',accept = ".xlsx")#,
),
#shinyFilesButton('file', 'File select', 'Upload material list', FALSE),
#bsAlert("alert"),
#shiny::actionLink('fbDesign_mlistExport', 'Material List Template'),
#textOutput("germplasm_alert")
fluidRow(
#br(),
#shiny::actionLink('exportButton', 'Material List Template'),
infoBoxOutput("approvalBox")#,
#HTML('<div style="float: left; margin: 0px 15px 5px 5px;">'),
#HTML('</div>'),
#tags$style(type='text/css', "#fbDesign_mlistExport { width:300px; margin-top: 25px;}"),
#tags$style(type='text/css', "#approvalBox { width:300px; margin-top: 25px;}")
)#,
#,
#shinyalert("shinyalert1", FALSE, auto.close.after = 5)
#actionButton("id_success","Save",styleclass="success",icon = "ok")
# )
#)
#)
),
shiny::tabPanel("Fieldbook Traits", value = "traits", icon = shiny::icon("star"),
br(),
#fluidRow(
# column(width = 6,
# box(
# title = "Step: 3", status = "warning", solidHeader = TRUE, collapsible = TRUE, width = NULL,
#shiny::uiOutput("designFieldbook_traits", inline = TRUE)
shinyTree::shinyTree("designFieldbook_traits",search = TRUE,checkbox = TRUE)
# )
# )
# )
),
shiny::tabPanel("Statistical design", value = "design", icon = shiny::icon("pie-chart"),
br(),
shiny::selectInput("designFieldbook", "Design method:", design_choices, multiple = FALSE),
#shiny::checkboxInput("designFieldbook_random", "Use randomization", TRUE),
design_conditional_panels()
),
shiny::tabPanel("Environment", value = 'environment', icon = shiny::icon("recycle"),
br(),
shiny::checkboxInput("designFieldbook_zigzag", "Zigzag", TRUE),
shiny::radioButtons("designFieldbook_serie", "Label series:",
#get_series_labels(), "101, 102, ...", #get_series_labels()[[2]],
1:3, 2,
inline = TRUE)
,
# shiny::conditionalPanel(
# "input.designFieldbook == 'RCBD'",
#shiny::checkboxInput("designFieldbook_cont", "Continuous numbering of plots", FALSE)
#),
shiny::radioButtons("fbDesign_environment_type", "Environment type",choices = list(
"Field" = "Field",
#"Farmers field" = "farmers_field",
"Greenhouse" = "Greenhouse",
"Screenhouse" = "Screenhouse"),selected = "Field" , inline = TRUE),
shiny::checkboxInput("fbDesign_weather_cb", label = "Register weather data"),
shiny::checkboxInput("fbDesign_soil_cb", label = "Register soil data")
# )
#)
#)
),
# shiny::tabPanel("Field", value = "fbDesign_field", icon = shiny::icon("male"),
# shiny::numericInput("fbDesign_field_size (ha)",
# "Field size", 1, 1, 100)
# ),
# shiny::tabPanel("Farmers field", value = "fbDesign_farmers_field"
# ),
# shiny::tabPanel("Greenhouse", value = "fbDesign_greenhouse"
# ),
# shiny::tabPanel("Screenhouse", value = "fbDesign_screenhouse"
# ),
shiny::tabPanel("Plant Installation", value = "fbDesign_planting", icon = shiny::icon("th-large"),
br(),
# fluidRow(
# column(width = 6,
# box(
# title = "Step: 6", status = "warning", solidHeader = TRUE, collapsible = TRUE, width = NULL,
shiny::numericInput("fbDesign_nplants",
"Number of plants per plot/pot", 10 , 1, 100),
shiny::numericInput("fbDesign_nplantsrow",
"Number of plants per row", 10, 1, 100),
shiny::numericInput("fbDesign_nrowplot",
"Number of row per plot/pot", 1, 1, 100),
#shiny::numericInput("fbDesign_psize","Plot size", 30, 1, 100),
shiny::numericInput("fbDesign_distPlants",
"Distance between plants (m)", .3, .1, 1),
shiny::numericInput("fbDesign_distRows",
"Distance between rows (m)", .9, .1, 1),
shiny::uiOutput("fbPlanting_psize", inline=TRUE),
shiny::uiOutput("fbPlanting_pdensity", inline=TRUE),
tags$head(tags$style("#fbDesign_pdensity{color:#191919;
background-color:#ecc464;
#font-size: 20px;
#font-style: italic;
}"
)
),
tags$head(tags$style("#fbDesign_psize{color:#191919;
background-color:#88e3a5;
#font-size: 20px;
#font-style: italic;
}"
)
)
# )
# )
# )
)#,
)#,
#shinyBS::bsAlert("alert_fb_done")
)
),
fluidRow(
HTML('<div style="float: right; margin: 0 15px 18px 0px;">'),
#shiny::actionButton(inputId = "refresh", label = "Refresh", icon = icon("fa fa-refresh")),
#shinyBS::bsButton( "fbDesign_draft", "BookView" ),
shiny::actionButton("fbDesign_draft", "Book preview", icon("table"), style="color: #fff; background-color: #337ab7; border-color: #2e6da4"),
shinysky::actionButton2("fbDesign_create", label = "Download", icon ="file-excel-o", icon.library = "bootstrap", styleclass= "color: #fff; background-color: #51a351; border-color: #51a351"),
#shiny::actionButton("fbDesign_create", "Download", icon("file-excel-o"), style="color: #fff; background-color: #51a351; border-color: #51a351"),
#shinyBS::bsAlert("alert_fb_done"),
shinysky::shinyalert("alert_fb_done", FALSE, auto.close.after = 5),
HTML('</div>')
),
shiny::fluidRow(
#box(
#column(width = 12,height=6,
shinydashboard::box(title = title,
status = "primary",
#height = 500,
#width = NULL,
solidHeader = TRUE,
width = 12, collapsible = TRUE,
#shiny::actionButton("butNewFieldbook", "New fieldbook", inline = TRUE)#,
rhandsontable::rHandsontableOutput("fbDesign_table", height = 400)
),
br(),
br(),
br()
#)
#)
),
br(),
br(),
br()
),
ui_design_big(type="tab",title="Special Modules",name="phenotype_fieldbook_design")
######
################## End Simple Modules
)# End of Master tabSetPanel
)
}
######
# shiny::tabPanel("Weather", value = "fbDesign_weather"
# ),
# shiny::tabPanel("Soil", value = "fbDesign_soil"
# ),
HIDAP/fbdesign documentation built on May 6, 2019, 9:46 p.m.
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Defines functions design_conditional_panels ui_fieldbook
Documented in ui_fieldbook
design_choices <- c(
"Unreplicated Design with No Randomization (UNDR)" = "UNDR",
"Randomized Complete Block Design (RCBD)" = "RCBD",
"Completely Randomized Design (CRD)" = "CRD",
"Augmented Block Design (ABD)" = "ABD",
"Latin Square Design (LSD)" = "LSD",
"Split Plot with Plots in CRD (SPCRD)" = "SPCRD",
"Split Plot with Plots in RCBD (SPRCBD)" = "SPRCBD",
"Split Plot with Plots in LSD (SPLSD)" = "SPLSD",
"Strip Plot Design (STRIP)" = "STRIP",
"Factorial Two-Way Design in CRD (F2CRD)" = "F2CRD",
"Factorial Two-Way Design in RCBD (F2RCBD)" = "F2RCBD",
# "Balanced Incomplete Block Design (BIBD)" = "BIBD",
# "Graeco-Latin Design (GLD)" = "GLD",
# "Youden Design (YD)" = "YD",
# "Cyclic Design (CD)" = "CD",
# "Lattice Design (LD)" = "LD" ,
"Alpha Design (AD)" = "AD" #,
# #"Augmented Partially Replicated Design (APRD)" = "APRD",
# #"Factorial Design (F2SPPD)" = "F2SPPD",
# #"North Carolina Design I" = "NCI",
# #"North Carolina Design II" = "NCII",
# #"North Carolina Design III" = "NCIII"
)
design_conditional_panels <- function(){
list(
shiny::conditionalPanel(
"input.designFieldbook == 'RCBD' |
input.designFieldbook == 'CRD' |
input.designFieldbook == 'F2CRD' |
input.designFieldbook == 'F2RCBD' |
input.designFieldbook == 'ABD' |
input.designFieldbook == 'DAU' |
input.designFieldbook == 'AD' |
input.designFieldbook == 'SPCRD'|
input.designFieldbook == 'SPRCBD'|
input.designFieldbook == 'SPLSD'|
input.designFieldbook == 'STRIP'",
# TODO: ab - factorial, split
shiny::selectInput("designFieldbook_r", "Replications (r):", 2:100, 2 )
),
shiny::conditionalPanel(
"input.designFieldbook == 'SPCRD' |
input.designFieldbook == 'SPRCBD'|
input.designFieldbook == 'F2CRD' |
input.designFieldbook == 'F2RCBD'|
input.designFieldbook == 'SPLSD'|
input.designFieldbook == 'STRIP'
",
#shiny::selectInput("designFieldbook_r", "Replications (r):", 1:5, 2 ),
textInput(inputId = "factor_name", label = "Enter Additional Factor Name",""),
br(),
textInput(inputId = "factor_lvl1", label = "First Level for Additional Factor",value = ""),
textInput(inputId = "factor_lvl2", label = "Second Level for Additional Factor",value = ""),
textInput(inputId = "factor_lvl3", label = "Third Level for Additional Factor",value = "")
),
shiny::conditionalPanel(
"input.designFieldbook == 'ABD'", # TODO: ab - factorial, split
infoBox(title = "IMPORTANT NOTE", subtitle = "Check if your material list have an 'x' mark in Is_control column.
Otherwise, Augmented Design does not work.",
icon = icon("bullhorn"), color = "blue", fill = TRUE, width = NULL)
),
shiny::conditionalPanel(
"input.designFieldbook == 'LD'", # TODO: ab - factorial, split
shiny::selectInput("designFieldbook_r", "Replications (r):", 2:100, 2 )
),
shiny::conditionalPanel(
"input.designFieldbook == 'BIBD'",
shiny::selectInput("designFieldbook_maxR", "Repetition maximum (k):", 3:100, 20 )
) ,
shiny::conditionalPanel(
"input.designFieldbook == 'AD' |
input.designFieldbook == 'BIBD'",
# TODO do server side checking of permitted combinations (based on number of treatments)
# trt = k * s
# s = number of blocks
# k = size of block (max is trt)
#
# r = 2: k <= s
# r = 3: s odd; k <= s
# r = 3: s even; k <= (s - 1)
# r = 4: s odd but not multiple of 3; k <= s
#shiny::selectInput("designFieldbook_r", "Replications (r):", 2:6000, 2 ),
shiny::selectInput("designFieldbook_k", "Block size (k):", 2:100, 4 )
),
shiny::conditionalPanel(
"input.designFieldbook == 'AD'", # TODO: ab - factorial, split
fluidRow(
shiny::wellPanel(
shiny::HTML("<b>ALPHA CONDITION:</b>"),
textOutput("alphaMessage")
)
)
),
# shiny::conditionalPanel(
# "input.designFieldbook == 'CD'",
# # TODO do server side checking of permitted combinations (based on number of treatments)
# # number of treatments 6:30
# shiny::selectInput("designFieldbook_r", "Replications (r):", 2:10, 2 ),
# shiny::selectInput("designFieldbook_k", "Block size (k):", 2:10,3 )
# ),
# shiny::conditionalPanel(
# "input.designFieldbook == 'LSD' |
# input.designFieldbook == 'RCBD' |
# input.designFieldbook == 'SPPD' |
# input.designFieldbook == 'BIBD'
# "#,
# #shiny::checkboxInput("designFieldbook_first", "Randomize first repetition", TRUE )
# )
# ,
shiny::conditionalPanel(
"input.designFieldbook == 'RCBD'"
# shiny::checkboxInput("designFieldbook_cont", "Continuous numbering of plots", FALSE)
)
)
}
#' shiny UI element
#'
#' returns a re-usable user interface element
#'
#' @author Reinhard Simon
#' @param type of ui Element; default is a tab in a shiny dashboard
#' @param title display title
#' @param name a reference name
#' @export
################## Begin Simple Modules
ui_fieldbook <- function(type="tab",title="Design Fieldbook",name="phenotype_fieldbook_design"){
#############
shinydashboard::tabItem(tabName = name,
shinyjs::useShinyjs(),
tabsetPanel( #Begin Master tabSetPanel
tabPanel("Standart Modules",icon = icon("tag", lib = "glyphicon"),
br(),
shiny::wellPanel(
shiny::HTML("<b>Fieldbook identifiers:</b>"),
shiny::textOutput("fbDesign_id")
),
fluidRow(
box(
title = "Fieldbook Design", status = "primary", solidHeader = TRUE,
collapsible = TRUE, width = 12,
#shiny::tabsetPanel(# id = "fbDesignNav",
shinydashboard::tabBox(id = "fbDesignNav", height = NULL, width = 12,
shiny::tabPanel("Crop & Location", value = "crop", icon = shiny::icon("leaf"),
br(),
fluidRow(
column(width = 6,
# box(
# title = "Step: 1", status = "warning", solidHeader = TRUE, collapsible = TRUE, width = NULL,height = NULL,
shiny::selectInput("designFieldbook_crop", "Crop", crops()),
shiny::uiOutput("fbDesign_factor2", inline = TRUE),
shiny::uiOutput("fbDesign_variables", inline = TRUE),
shiny::dateRangeInput("fbDesign_project_time_line", "Date of Experiment", start = Sys.Date() - 2,
end = Sys.Date() + 20, startview = "year",format = "dd/mm/yyyy"),
#shiny::uiOutput("fbDesign_country", inline = TRUE, width = 500),#country
#shiny::selectizeInput("fbDesign_country", inline = TRUE, width = 500),#country
shiny::selectizeInput("fbDesign_countryTrial", label = "Field Country:",
choices = country(), selected = 1, multiple = FALSE),
shiny::uiOutput("fbDesign_countrySite", inline = TRUE, width = 500), #,#locality
selectInput('fbDesign_nExp', 'Experiment number', c("-",paste("exp",1:100,sep="")), selectize=TRUE)
# )
# shiny::tabPanel("Project", value = "project", icon = shiny::icon("book"),
# #shiny::uiOutput("fbDesign_project", inline = TRUE),
# shiny::textInput("fbDesign_project_name", "Project name"),
# shiny::textInput("fbDesign_project_objective", "Project objective"),
# #shiny::textInput("fbDesign_comments", "Project comments"),
# shiny::dateRangeInput("fbDesign_project_time_line", "Date range")
#
# ),
# shiny::tabPanel("Plants", value = "plants", icon = shiny::icon("star"),
# shiny::uiOutput("designFieldbook_genotypes", inline = TRUE)
# ),
)
)
),
shiny::tabPanel("Material List", value = "plants", icon = shiny::icon("list-alt"),
br(),
# fluidRow(
# column(width = 6,
# box(
# title = "Step: 2", status = "warning", solidHeader = TRUE, collapsible = TRUE, width = NULL,
#shiny::uiOutput("designFieldbook_genotypes", inline = TRUE),
h4("Define Genotypes",style = "font-family: 'Arial', cursive;
font-weight: 500; line-height: 1.1;
color: #4d3a7d;"),
radioButtons("select_import", label = h4("Select Type of Import Material List"),
choices = c("Local List", "Template"),
selected = "Local List"),
br(),
conditionalPanel(
condition = "input.select_import == 'Local List'",
shiny::uiOutput("fbDesign_selmlist"),
shiny::actionButton("fdesign_list_refresh","Refresh List"),
br()#,
),
conditionalPanel(
condition = "input.select_import == 'Template'",
downloadButton(outputId = "fbDesign_mlistExport", label = "Material List Template"),
fileInput(inputId = 'file',label = 'Upload material list file',accept = ".xlsx")#,
),
#shinyFilesButton('file', 'File select', 'Upload material list', FALSE),
#bsAlert("alert"),
#shiny::actionLink('fbDesign_mlistExport', 'Material List Template'),
#textOutput("germplasm_alert")
fluidRow(
#br(),
#shiny::actionLink('exportButton', 'Material List Template'),
infoBoxOutput("approvalBox")#,
#HTML('<div style="float: left; margin: 0px 15px 5px 5px;">'),
#HTML('</div>'),
#tags$style(type='text/css', "#fbDesign_mlistExport { width:300px; margin-top: 25px;}"),
#tags$style(type='text/css', "#approvalBox { width:300px; margin-top: 25px;}")
)#,
#,
#shinyalert("shinyalert1", FALSE, auto.close.after = 5)
#actionButton("id_success","Save",styleclass="success",icon = "ok")
# )
#)
#)
),
shiny::tabPanel("Fieldbook Traits", value = "traits", icon = shiny::icon("star"),
br(),
#fluidRow(
# column(width = 6,
# box(
# title = "Step: 3", status = "warning", solidHeader = TRUE, collapsible = TRUE, width = NULL,
#shiny::uiOutput("designFieldbook_traits", inline = TRUE)
shinyTree::shinyTree("designFieldbook_traits",search = TRUE,checkbox = TRUE)
# )
# )
# )
),
shiny::tabPanel("Statistical design", value = "design", icon = shiny::icon("pie-chart"),
br(),
shiny::selectInput("designFieldbook", "Design method:", design_choices, multiple = FALSE),
#shiny::checkboxInput("designFieldbook_random", "Use randomization", TRUE),
design_conditional_panels()
),
shiny::tabPanel("Environment", value = 'environment', icon = shiny::icon("recycle"),
br(),
shiny::checkboxInput("designFieldbook_zigzag", "Zigzag", TRUE),
shiny::radioButtons("designFieldbook_serie", "Label series:",
#get_series_labels(), "101, 102, ...", #get_series_labels()[[2]],
1:3, 2,
inline = TRUE)
,
# shiny::conditionalPanel(
# "input.designFieldbook == 'RCBD'",
#shiny::checkboxInput("designFieldbook_cont", "Continuous numbering of plots", FALSE)
#),
shiny::radioButtons("fbDesign_environment_type", "Environment type",choices = list(
"Field" = "Field",
#"Farmers field" = "farmers_field",
"Greenhouse" = "Greenhouse",
"Screenhouse" = "Screenhouse"),selected = "Field" , inline = TRUE),
shiny::checkboxInput("fbDesign_weather_cb", label = "Register weather data"),
shiny::checkboxInput("fbDesign_soil_cb", label = "Register soil data")
# )
#)
#)
),
# shiny::tabPanel("Field", value = "fbDesign_field", icon = shiny::icon("male"),
# shiny::numericInput("fbDesign_field_size (ha)",
# "Field size", 1, 1, 100)
# ),
# shiny::tabPanel("Farmers field", value = "fbDesign_farmers_field"
# ),
# shiny::tabPanel("Greenhouse", value = "fbDesign_greenhouse"
# ),
# shiny::tabPanel("Screenhouse", value = "fbDesign_screenhouse"
# ),
shiny::tabPanel("Plant Installation", value = "fbDesign_planting", icon = shiny::icon("th-large"),
br(),
# fluidRow(
# column(width = 6,
# box(
# title = "Step: 6", status = "warning", solidHeader = TRUE, collapsible = TRUE, width = NULL,
shiny::numericInput("fbDesign_nplants",
"Number of plants per plot/pot", 10 , 1, 100),
shiny::numericInput("fbDesign_nplantsrow",
"Number of plants per row", 10, 1, 100),
shiny::numericInput("fbDesign_nrowplot",
"Number of row per plot/pot", 1, 1, 100),
#shiny::numericInput("fbDesign_psize","Plot size", 30, 1, 100),
shiny::numericInput("fbDesign_distPlants",
"Distance between plants (m)", .3, .1, 1),
shiny::numericInput("fbDesign_distRows",
"Distance between rows (m)", .9, .1, 1),
shiny::uiOutput("fbPlanting_psize", inline=TRUE),
shiny::uiOutput("fbPlanting_pdensity", inline=TRUE),
tags$head(tags$style("#fbDesign_pdensity{color:#191919;
background-color:#ecc464;
#font-size: 20px;
#font-style: italic;
}"
)
),
tags$head(tags$style("#fbDesign_psize{color:#191919;
background-color:#88e3a5;
#font-size: 20px;
#font-style: italic;
}"
)
)
# )
# )
# )
)#,
)#,
#shinyBS::bsAlert("alert_fb_done")
)
),
fluidRow(
HTML('<div style="float: right; margin: 0 15px 18px 0px;">'),
#shiny::actionButton(inputId = "refresh", label = "Refresh", icon = icon("fa fa-refresh")),
#shinyBS::bsButton( "fbDesign_draft", "BookView" ),
shiny::actionButton("fbDesign_draft", "Book preview", icon("table"), style="color: #fff; background-color: #337ab7; border-color: #2e6da4"),
shinysky::actionButton2("fbDesign_create", label = "Download", icon ="file-excel-o", icon.library = "bootstrap", styleclass= "color: #fff; background-color: #51a351; border-color: #51a351"),
#shiny::actionButton("fbDesign_create", "Download", icon("file-excel-o"), style="color: #fff; background-color: #51a351; border-color: #51a351"),
#shinyBS::bsAlert("alert_fb_done"),
shinysky::shinyalert("alert_fb_done", FALSE, auto.close.after = 5),
HTML('</div>')
),
shiny::fluidRow(
#box(
#column(width = 12,height=6,
shinydashboard::box(title = title,
status = "primary",
#height = 500,
#width = NULL,
solidHeader = TRUE,
width = 12, collapsible = TRUE,
#shiny::actionButton("butNewFieldbook", "New fieldbook", inline = TRUE)#,
rhandsontable::rHandsontableOutput("fbDesign_table", height = 400)
),
br(),
br(),
br()
#)
#)
),
br(),
br(),
br()
),
ui_design_big(type="tab",title="Special Modules",name="phenotype_fieldbook_design")
######
################## End Simple Modules
)# End of Master tabSetPanel
)
}
######
# shiny::tabPanel("Weather", value = "fbDesign_weather"
# ),
# shiny::tabPanel("Soil", value = "fbDesign_soil"
# ),
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