This package contains methods for the sequential (real-time, online) analysis of phylogenies and sequence data.
To install the devel version of the package, type:
devtools::install_github(c("bdearlove/treeImbalance","emvolz-phylodynamics/phydynR","Hackout3/saphy"),build_vignettes=TRUE)
#devtools::install_github("Hackout3/saphy",build_vignettes=TRUE)
Note that this requires the package devtools installed.
Note if using a mac, you will need lgfortran and lquadmath libraries installed before hand in order to compile rhydynR:
curl -O http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2
sudo tar fvxz gfortran-4.8.2-darwin13.tar.bz2 -C /
Maintainer (temporary): Simon Frost (sdwfrost@gmail.com)
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