README.md

Travis-CI Build Status

Coverage Status

saphy: sequential analysis of phylogenies

This package contains methods for the sequential (real-time, online) analysis of phylogenies and sequence data.

Schema v1.0

Installing the package

To install the devel version of the package, type:

devtools::install_github(c("bdearlove/treeImbalance","emvolz-phylodynamics/phydynR","Hackout3/saphy"),build_vignettes=TRUE)
#devtools::install_github("Hackout3/saphy",build_vignettes=TRUE)

Note that this requires the package devtools installed.

Note if using a mac, you will need lgfortran and lquadmath libraries installed before hand in order to compile rhydynR:

curl -O http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2
sudo tar fvxz gfortran-4.8.2-darwin13.tar.bz2 -C /

Contributors (by alphabetic order):

Maintainer (temporary): Simon Frost ([email protected])



Hackout3/saphy documentation built on May 6, 2019, 10:52 p.m.