Files in Hackout3/saphy
Sequential Analysis of Phylogenies
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/branchLengthMetrics.R
R/distance_matrix.R
R/imbalanceMetrics.R
R/imbalanceThreshold.R
R/imbalanceTips.R
R/permuteTrees.R
R/plotBranchLengths.R
R/prunePermute.R
R/simulatetree.R
R/timeprune.R
R/tiplength.R
README.Rmd
README.md
inst/scheme.png
inst/trees/Zika_newick.tre
man/branchLengthMetrics.Rd
man/compute.distance.matrix.Rd
man/expand.distance.matrix.Rd
man/imbalanceMetrics.Rd
man/imbalanceThreshold.Rd
man/pairwise.distance.Rd
man/permuteTrees.Rd
man/plot.branch.lengths.Rd
man/prunePermute.Rd
man/simulatetree.Rd
man/timeprune.Rd
man/tiplength.Rd
saphy.Rproj
tests/testthat.R
tests/testthat/test_distance_matrix.R
tests/testthat/test_prune_tree.R
vignettes/introduction.Rmd
