In Hackout3/saphy: Sequential Analysis of Phylogenies

saphy: sequential analysis of phylogenies

This package contains methods for the sequential (real-time, online) analysis of phylogenies and sequence data.

Installing the package

To install the devel version of the package, including vignettes, type:

devtools::install_github("Hackout3/saphy",build_vignettes=TRUE)
devtools::install_github(c("bdearlove/treeImbalance","emvolz-phylodynamics/phydynR","Hackout3/saphy"),build_vignettes=TRUE)

Note that this requires the package devtools installed.

Note if using a mac, you will need lgfortran and lquadmath libraries installed before hand in order to compile rhydynR

Contributors (by alphabetic order):

• Simon Frost (@sdwfrost)
• Don Klinkenberg (@donkeyshot)
• Yu Luo (@yumcgill)
• OJ Watson (@OJWatson)

Maintainer (temporary): Simon Frost ([e-mail])

Hackout3/saphy documentation built on May 6, 2019, 10:52 p.m.