pairwise.distance: Calculate pairwise distance between two sequences
In Hackout3/saphy: Sequential Analysis of Phylogenies
Description
Usage
Arguments
Value
Author(s)
Description
pairwise.distance calculates the pairwise distance between two sequences.
Usage
1
pairwise.distance(s1, s2, model = "TN93", gamma = FALSE)
Arguments
s1
a nucleotide sequence
s2
a second nucleotide sequence. The sequences should be of equal length
model
model of nucleotide substitution (default=TN93)
gamma
The gamma parameter of rate variation
Value
The distance (as a double).
Author(s)
Simon Frost (sdwfrost@gmail.com)
Hackout3/saphy documentation built on May 6, 2019, 10:52 p.m.
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Description Usage Arguments Value Author(s)
Description
pairwise.distance calculates the pairwise distance between two sequences.
Usage
1 | pairwise.distance(s1, s2, model = "TN93", gamma = FALSE)
|
Arguments
s1 |
a nucleotide sequence |
s2 |
a second nucleotide sequence. The sequences should be of equal length |
model |
model of nucleotide substitution (default=TN93) |
gamma |
The gamma parameter of rate variation |
Value
The distance (as a double).
Author(s)
Simon Frost (sdwfrost@gmail.com)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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