Description Usage Arguments Value Author(s)
expand.distance.matrix
updates a pairwise distance matrix with distances calculated between
the existing alignment and an additional sequence (assumed to be aligned)
1 2 | expand.distance.matrix(aln, s, distmat = NULL, model = "TN93",
gamma = FALSE)
|
aln |
a multiple sequence alignment |
s |
a nucleotide sequence |
distmat |
a distance matrix (as a standard matrix). If |
model |
a model of nucleotide substitution (default=TN93) |
gamma |
the gamma parameter of rate variation |
A list with two elements: distmat, a distance matrix (as a standard R matrix), and aln, an updated alignment.
Simon Frost (sdwfrost@gmail.com)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.