get.ensembl.info: Helper function to retrieve species information from the...

In HajkD/biomartr: Genomic Data Retrieval

Helper function to retrieve species information from the ENSEMBL API

Description

This function interfaces with the ENSEMBL API (https://rest.ensembl.org/info/species?content-type=application/json) and internally stores the output to use this information for subsequent retrieval function calls.

Usage

get.ensembl.info(update = FALSE, division)

Arguments

update	logical, default FALSE. If TRUE, force re-download of info.
division	the ENSEMBL database (division) for which information shall be retrieved (available options can be obtained with ensembl_divisions).

Author(s)

Hajk-Georg Drost

See Also

ensembl_divisions, getKingdomAssemblySummary, getENSEMBLInfo

Examples

## Not run: 
# Look at available ENSEMBL division options
ensembl_divisions()
# Retrieve available information for EnsemblVertebrates
example <- get.ensembl.info(division = "EnsemblVertebrates")
example
# Update information file stored in the tempdir() folder.
example_update <- get.ensembl.info(division = "EnsemblVertebrates", update = TRUE)
example_update

## End(Not run)

HajkD/biomartr documentation built on Dec. 9, 2023, 7:25 p.m.