getGO | R Documentation |
This function takes a gene id as character vector from a given query organism and returns the corresponding GO terms and additional GO information.
getGO(organism, genes, filters, ...)
organism |
a character string specifying the scientific name of a query organism. |
genes |
a character vector storing the gene ids of a organisms of interest to be queried against Ensembl Biomart. |
filters |
a character vector specifying the filter (query key) for
the Ensembl Biomart query, e.g. |
... |
additional parameters that can be passed to the
|
This function takes the scientific name of a query organism, a set of genes for which GO terms and additional information shall be retrieved, and a filter argument that specifies the attribute for the query genes.
Hajk-Georg Drost
biomart
, organismFilters
,
organismBM
, getBM
,
getMarts
, getDatasets
,
getFilters
## Not run:
GO_tbl <- getGO(organism = "Arabidopsis thaliana",
genes = c("AT1G06090", "AT1G06100"),
filters = "ensembl_gene_id")
# look at the result
head(GO_tbl)
## End(Not run)
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