getENSEMBL.Seq | R Documentation |
This function downloads gff files of query organisms from ENSEMBL.
getENSEMBL.Seq(
organism,
type = "dna",
id.type = "toplevel",
release = NULL,
path
)
organism |
Organism selector id, there are three options to characterize an organism:
|
type |
character, biological sequence type (e.g. "dna", "cds") |
id.type |
a character, default "toplevel". id type of assembly, either "toplevel" or "primary_assembly" for genomes. Can be other strings, for non genome objects. |
release |
a numeric, the database release version of ENSEMBL ( |
path |
location where file shall be stored. |
either a character path to downloaded file, or a logical FALSE, specifying failure.
Hajk-Georg Drost
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