combinePathsFuncDefault: Combine microbial growth on different pathways by one microbe

In HelenKettle/microPop: Modelling Microbial Populations

Description

Returns a vector specifying the fraction of the total microbial growth on each pathway. This function is needed to ensure that groups which have the most paths do not automatically have the most growth - i.e. need to weight the growth on each pathway.

Usage

combinePathsFuncDefault(strainName, groupName, growthRate, num.paths, pathNames)

Arguments

strainName	Name of the strain that is being looped through in the ODE solver
groupName	Name of microbial group that is being looped through in the ODE solver
growthRate	(vector) microbial growth rate (mass per unit time) on each pathway
num.paths	(integer) is the number of paths for the given strain
pathNames	Vector of names of all metabolic paths e.g. c('path1','path2')

Value

vector specifying the fraction of the total microbial growth on each pathway

HelenKettle/microPop documentation built on May 18, 2019, 9:15 p.m.