Description Usage Arguments Value
View source: R/growthLimFuncDefault.R
Returns the value of growthLim (must lie in interval [0,1] i.e. unitless) of strainName on varName which is used to scale the maximum growth rate Contains two options - one for essential resources and one for substitutable resources (based on Ballyk and Wolkowicz, 1993)
1 2 | growthLimFuncDefault(strainName, groupName, pathName, varName, resourceValues,
allSubType, strainHalfSat, stateVarValues)
|
strainName |
Name of the strain that is being looped through in the ODE solver |
groupName |
Name of microbial group that is being looped through in the ODE solver |
pathName |
Name of metabolic path (e.g. path1) that is being looped through in the ODE solver |
varName |
(string) Name of variable (resource) of interest |
resourceValues |
State vector of resources (with names) |
allSubType |
Vector of strings (with names corresponding to the resourceNames) which describes the type of each resource ('Rtype') - Rtypes are S (substitutable resource), Se (essential resource), Sb (booster resource), Sm (microbial resource), P (product) and Pb (biomass product) |
strainHalfSat |
Vector (with names corresponding to the resourceNames) of half-saturation constants for the given strain. If resource is not a substrate for the given strain, the value is NA |
stateVarValues |
State vector (resources and microbes) (with names) |
scalar giving limitation on growth rate - must be >=0 and <=1
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.