Files in HelenKettle/microPop
Modelling Microbial Populations

DESCRIPTION
LICENSE
NAMESPACE
R/applyTraitTradeOffs.R R/assignNAsToMFGs.R R/assignStrainTraits.R R/checkResInfo.R R/checkSolution.R R/checkStoichiom.R R/combineGrowthLimFuncDefault.R R/combinePathsFuncDefault.R R/createDF.R R/data.R R/derivsDefault.R R/entryRateFuncDefault.R R/extraGrowthLimFuncDefault.R R/getAllResources.R R/getGroupName.R R/getKeyRes.R R/getMolarStoichiom.R R/getMolarYields.R R/getNonBoostFrac.R R/getNumPaths.R R/getPHcorners.R R/getStrainPHcorners.R R/getStrainParamsFromFile.R R/getValues.R R/growthLimFuncDefault.R R/makeInflowFromSoln.R R/makeParamMatrixG.R R/makeParamMatrixS.R R/massBalanceFuncDefault.R R/microPop-internal.R R/microPop-package.R R/microPopModel.R R/pHFuncDefault.R R/pHLimFuncDefault.R R/pHcentreOfMass.R R/plotTraitChange.R R/productionFuncDefault.R R/productionFuncOld.R R/quickPlot.R R/rateFuncsDefault.R R/removalRateFuncDefault.R R/replaceListItems.R R/runMicroPopExample.R R/subsetFunc.R R/uptakeFuncDefault.R R/waterUptakeRatio.R
R/waterUptakeRatio.R~
README.md
data/Acetogens.RData
data/Bacteroides.RData
data/ButyrateProducers1.RData
data/ButyrateProducers2.RData
data/ButyrateProducers3.RData
data/LactateProducers.RData
data/MFG.RData
data/Methanogens.RData
data/NoButyFibreDeg.RData
data/NoButyStarchDeg.RData
data/PropionateProducers.RData
data/Xaa.RData
data/Xh2.RData
data/Xsu.RData
data/microbeSysInfoHuman.RData
data/microbeSysInfoRumen.RData
data/resourceSysInfoHuman.RData
data/resourceSysInfoRumen.RData
data/strainParams.RData
data/systemInfoMicrobesPhyto.RData
data/systemInfoMicrobesVirus.RData
data/systemInfoResourcesPhyto.RData
data/systemInfoResourcesVirus.RData
inst/DemoFiles/human1.R inst/DemoFiles/human2.R inst/DemoFiles/human3.R inst/DemoFiles/human4.R inst/DemoFiles/phages.R inst/DemoFiles/phyto.R inst/DemoFiles/rumen.R
inst/extdata/Acetogens.csv
inst/extdata/Bacteroides.csv
inst/extdata/ButyrateProducers1.csv
inst/extdata/ButyrateProducers2.csv
inst/extdata/ButyrateProducers3.csv
inst/extdata/LactateProducers.csv
inst/extdata/MFG.csv
inst/extdata/Methanogens.csv
inst/extdata/NoButyFibreDeg.csv
inst/extdata/NoButyStarchDeg.csv
inst/extdata/PropionateProducers.csv
inst/extdata/Xaa.csv
inst/extdata/Xh2.csv
inst/extdata/Xsu.csv
inst/extdata/microbeSysInfo.csv
inst/extdata/microbeSysInfoHuman.csv
inst/extdata/microbeSysInfoRumen.csv
inst/extdata/resourceSysInfo.csv
inst/extdata/resourceSysInfoHuman.csv
inst/extdata/resourceSysInfoRumen.csv
inst/extdata/strainParams.csv
inst/extdata/systemInfoMicrobesPhyto.csv
inst/extdata/systemInfoMicrobesVirus.csv
inst/extdata/systemInfoResourcesPhyto.csv
inst/extdata/systemInfoResourcesVirus.csv
man/Acetogens.Rd man/Bacteroides.Rd man/ButyrateProducers1.Rd man/ButyrateProducers2.Rd man/ButyrateProducers3.Rd man/LactateProducers.Rd man/MFG.Rd man/Methanogens.Rd man/NoButyFibreDeg.Rd man/NoButyStarchDeg.Rd man/PropionateProducers.Rd man/Xaa.Rd man/Xh2.Rd man/Xsu.Rd man/applyTraitTradeOffs.Rd man/assignNAsToMFGS.Rd man/assignNAsToMFGs.Rd man/assignStrainTraits.Rd man/checkResInfo.Rd man/checkSolution.Rd man/checkStoichiom.Rd man/combineGrowthLimFuncDefault.Rd man/combinePathsFuncDefault.Rd man/createDF.Rd man/derivsDefault.Rd man/entryRateFuncDefault.Rd man/extraGrowthLimFuncDefault.Rd man/getAllResources.Rd man/getGroupName.Rd man/getKeyRes.Rd man/getMolarStoichiom.Rd man/getNonBoostFrac.Rd man/getNumPaths.Rd man/getPHcorners.Rd man/getStrainPHcorners.Rd man/getStrainParamsFromFile.Rd man/getValues.Rd man/growthLimFuncDefault.Rd man/makeInflowFromSoln.Rd man/makeParamMatrixG.Rd man/makeParamMatrixS.Rd man/massBalanceFuncDefault.Rd man/microPop-package.Rd man/microPopModel.Rd man/microbeSysInfo.Rd man/microbeSysInfoHuman.Rd man/microbeSysInfoRumen.Rd man/pHFuncDefault.Rd man/pHLimFuncDefault.Rd man/pHcentreOfMass.Rd man/plotTraitChange.Rd man/productionFuncDefault.Rd man/quickPlot.Rd man/rateFuncsDefault.Rd man/removalRateFuncDefault.Rd man/replaceListItems.Rd man/resourceSysInfo.Rd man/resourceSysInfoHuman.Rd man/resourceSysInfoRumen.Rd man/runMicroPopExample.Rd man/strainParams.Rd man/subsetFunc.Rd man/systemInfoMicrobesPhyto.Rd man/systemInfoMicrobesVirus.Rd man/systemInfoResourcesPhyto.Rd man/systemInfoResourcesVirus.Rd man/uptakeFuncDefault.Rd man/waterUptakeRatio.Rd tests/testthat.R tests/testthat/loadTestDataFunc.R tests/testthat/testsForModelRun0.R tests/testthat/testsForModelRun1.R tests/testthat/testsForStrainFuncs.R tests/testthat/testsWithNoModelRun.R vignettes/microPop.pdf
vignettes/microPop.pdf.asis
HelenKettle/microPop documentation built on Aug. 16, 2017, 3:09 p.m.