Description Usage Arguments Value
View source: R/uptakeFuncDefault.R
Return the value of resource uptake per biomass (i.e. resource quantity per unit time per mass unit of biomass) for given resource
1 2 | uptakeFuncDefault(strainName, groupName, pathName, varName, keyResName, subst,
ess, boost, maxGrowthRate, growthLim, yield, nonBoostFrac, stoichiom, parms)
|
strainName |
Name of the strain that is being looped through in the ODE solver |
groupName |
Name of microbial group that is being looped through in the ODE solver |
pathName |
Name of metabolic path (e.g. path1) that is being looped through in the ODE solver |
varName |
(string). Calculate uptake of this variable |
keyResName |
(string). Name of the key resource on this pathway |
subst |
Vector of strings giving the names of the substitutable resources for given strain, pathway |
ess |
Vector of strings giving the names of the essential resources for given strain, pathway |
boost |
Vector of strings giving the names of the boosting resources for given strain, pathway |
maxGrowthRate |
Vector containing maximum growth rate on each resource (named by resourceNames). If a resource is not on the pathway the value is NA |
growthLim |
Vector containing the growth limitation from each resource (named by resourceNames). If a resource is not on the pathway the value is NA |
yield |
Named vector (names are resourceNames) giving the mass yield of biomass on each resource (mass microbe/mass resource) |
nonBoostFrac |
(scalar) Fraction of max growth achievable if boosting resource is not present but is required on this pathway |
stoichiom |
Named vector (names are resourceNames) giving the mass of each resource in the stoichiometry i.e. molar mass of resource multiplied by the number of moles in the stoichiometry |
parms |
List containing all system parameters |
(scalar) uptake of resource per mass unit of biomass (units are resource mass/biomass/time)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.