| array2df | Reshape array to data.frame |
| auto_layout | Automatically select the layout. |
| bffr.batch | Create buffer based on species polygons |
| bind_poly | Bind list of SpatialPolygons into a single SpatialPolygons... |
| buffer_b | Create buffer based on species polygons |
| calib_mdl | Calibrate MaxEnt models based on model selection criteria |
| calib_mdl_b | Calibrate MaxEnt models based on model selection criteria for... |
| check_install_pkg | Check if package is installed and install if needed |
| circle4compass_rose | Draws circle over compass rose in plotted map |
| comm_gr_trait | Group taxa by trait |
| comm_spatial_metric | Compute spatial metrics for each trait grouped taxa |
| compass_rose | Draw north arrow in plotted map |
| consensus_gr | Group climate scenarios for consensual projections |
| consensus_scn | Create consensual projections of climatic scenarios |
| consensus_scn_b | Create consensual projections of climatic scenarios for... |
| correlated | Find highly correlated variables |
| cut_calibarea_b | Cut calibration area based on a list of SpatialPolygons Use a... |
| cut_projarea | Cut area for projection based on SpatialPolygons |
| cut_projarea_b | Cut area for projection based on a list of SpatialPolygons |
| cut_projarea_mscn_b | Cut multiple projection areas (climatic scenarios) for... |
| cut_projarea_rst | Cut a projection area based on a SpatialPolygon (e.g.... |
| cut_projarea_rst_b | Cut projection areas of multiple species based on a single... |
| cut_projarea_rst_mscn_b | Cut multiple projection areas of multiple species based on a... |
| empty2zero | Check if element is empty |
| ENMevaluate_b | Tuning and evaluation of ENMs with Maxent for several species... |
| ENMevaluate.batch | Tuning and evaluation of ENMs with Maxent for several species... |
| ENMevaluate.l.opt | Optimize the size of ENMevaluate_b objects |
| ensemble_projs | Ensemble models (AvgAIC, WAAUC, EBPM, ESORIC) |
| env.cut | Cut calibration area based on a list of SpatialPolygons Use a... |
| env_thin | Thinning of occurrence records using environmental... |
| env_thin_b | Thinning of occurrence records using environmental... |
| e_thin_algorithm | Thinning of occurrence records using environmental... |
| f.area.occ.mscn | Plot differences in suitable areas between climatic scenarios |
| f.args | Model selection and creation of MaxEnt arguments for selected... |
| f.FPA | Compute variable contribution and permutation importance |
| find_repeated_characters | Find repeated characters in a character vector |
| f.OR | Compute "Fractional predicted area" ('n of occupied... |
| f.thr | Apply threshold for MaxEnt projections of a species |
| f.thr.batch | Apply threshold for MaxEnt projections for multiple species |
| f.var.ci | Compute species' total suitable area |
| get_cont_permimport | Compute variable contribution and permutation importance |
| get_cont_permimport_b | Compute variable contribution and permutation importance |
| get_fpa | Compute "Fractional predicted area" ('n of occupied... |
| get_fpa_b | Compute "Fractional predicted area" ('n of occupied... |
| get_occ_suit | Extract suitability values from all projections for known... |
| get_occ_suit_b | Extract suitability values from all projections for known... |
| get_OR | Compute "Omission Rate" |
| get_or_ensemble | Compute Omission Rate for a species' ensembled model |
| get_or_ensemble_b | Compute Omission Rate for a list of species' ensembled models |
| get_rsa | Compute changes in total suitable area |
| get_rsa_b | Compute changes in total suitable area for multiple species |
| get_tsa | Compute species' total suitable area |
| get_tsa_b | Compute total suitable area for multiple species |
| is_inst | Check if package is installed |
| load_calib_data_b | Load calibration areas already created |
| load_env_thin_occ | Load filtered occurrence data |
| load_thin_occ | Load filtered occurrence data |
| loadTocc | Load filtered occurrence data |
| make_underscript | Plot compare climatic scenarios differences between model... |
| mask_thr_projs_mscn_b | Remove areas from projections using polygons or binary... |
| mod_sel | Model selection and creation of MaxEnt arguments for selected... |
| mop | Extrapolation risk analysis |
| mop_b | Extrapolation risk analysis for a list of species |
| mopi | low level MOP function |
| mopout | Detecting values out of the environmental range of M |
| mxnt.c | Calibrate MaxEnt models based on model selection criteria |
| mxnt.c.batch | Calibrate MaxEnt models based on model selection criteria for... |
| mxnt.p | Project calibrated MaxEnt models |
| mxnt.p.batch | Project calibrated MaxEnt models |
| mxnt.p.batch.mscn | Project calibrated MaxEnt models for several species onto... |
| north_arrow | Draw north arrow in plotted map |
| optENMevalObjL | Optimize the size of ENMevaluate_b objects |
| plot_mdl | internal function for 'plot_mdl_diff', 'plot_scn_diff_b' |
| plot_mdl_diff | Plot differences in suitable areas between models selected... |
| plotMdlDiff | Plot differences in suitable areas between models selected... |
| plot_mdl_diff_b | Plot differences in suitable areas between models selected... |
| plot_scn | internal function for 'plot_mdl_diff', 'plot_scn_diff_b' |
| plot_scn_diff | Plot differences in suitable areas between climatic scenarios |
| plotScnDiff | Plot differences in suitable areas between models selected... |
| plot_scn_diff_b | Plot differences in suitable areas between climatic scenarios... |
| poly.c | Create minimum convex polygon based on species occurence data |
| poly.c.batch | Create minimum convex polygon based on coordinates of species... |
| pred.a | Cut area for projection based on a list of SpatialPolygons |
| pred.a.batch | Cut area for projection based on a list of SpatialPolygons |
| pred.a.batch.mscn | Cut multiple projection areas (climatic scenarios) for... |
| pred.a.batch.rst | Cut projection areas of multiple species based on a single... |
| pred.a.batch.rst.mscn | Cut multiple projection areas of multiple species based on a... |
| pred.a.poly | Select area for projection based on the extent of occ points |
| pred.a.poly.batch | Select area for projection based on the extent of occ points... |
| pred.a.rst | Cut a projection area based on a SpatialPolygon (e.g.... |
| proj_mdl | Project calibrated MaxEnt models |
| proj_mdl_b | Project calibrated MaxEnt models for several species onto... |
| range_shift | Map shifts in suitable areas |
| range_shift_b | Map shifts in suitable areas |
| raster_overlap_b | Raster overlap between models selected using different... |
| rescale | Re-scale a variable to a desired range. |
| select_vars | Find, optionally remove, highly correlated variables from a... |
| select_vars_b | Find, optionally remove, highly correlated variables from a... |
| sel_env | Find, optionally remove, highly correlated variables from a... |
| sel_env_b | Find, optionally remove, highly correlated variables from a... |
| set_calibarea | Create minimum convex polygon based on species occurence data |
| set_calibarea_b | Create minimum convex polygon based on coordinates of species... |
| set_projarea | Select area for projection based on the extent of occ points |
| set_projarea_b | Select area for projection based on the extent of occ points... |
| split_poly | Split a species occ polygon (whenever distribution seems... |
| thin_b | Spatially thin a list of species occurrence data |
| thin.batch | Spatially thin a list of species occurrence data |
| thrshld | Apply threshold for MaxEnt projections of a species |
| thrshld_b | Apply threshold for MaxEnt projections for multiple species |
| tnm | Threshold names to sub |
| tr | Threshold names to sub |
