Man pages for HemingNM/ENMwizard
Advanced Tecniques for Ecological Niche Modeling Made Easy

auto_layoutAutomatically select the layout.
bffr.batchCreate buffer based on species polygons
bind_polyBind list of SpatialPolygons into a single SpatialPolygons...
buffer_bCreate buffer based on species polygons
calib_mdlCalibrate MaxEnt models based on model selection criteria
calib_mdl_bCalibrate MaxEnt models based on model selection criteria for...
cut_calibarea_bCut calibration area based on a list of SpatialPolygons Use a...
cut_projareaCut area for projection based on SpatialPolygons
cut_projarea_bCut area for projection based on a list of SpatialPolygons
cut_projarea_mscn_bCut multiple projection areas (climatic scenarios) for...
cut_projarea_rstCut a projection area based on a SpatialPolygon (e.g....
cut_projarea_rst_bCut projection areas of multiple species based on a single...
cut_projarea_rst_mscn_bCut multiple projection areas of multiple species based on a...
ENMevaluate_bTuning and evaluation of ENMs with Maxent for several species...
ENMevaluate.batchTuning and evaluation of ENMs with Maxent for several species...
ENMevaluate.l.optOptimize the size of ENMevaluate_b objects
ensemble_projsEnsemble models (AvgAIC, WAAUC, EBPM, ESOR)
env.cutCut calibration area based on a list of SpatialPolygons Use a...
f.area.occ.mscnPlot differences in suitable areas between climatic scenarios
f.argsModel selection and creation of MaxEnt arguments for selected...
f.FPACompute variable contribution and permutation importance
f.ORCompute "Fractional predicted area" ('n of occupied...
f.thrApply threshold for MaxEnt projections of a species
f.thr.batchApply threshold for MaxEnt projections for multiple species
f.var.ciCompute species' total suitable area
get_cont_permimportCompute variable contribution and permutation importance
get_cont_permimport_bCompute variable contribution and permutation importance
get_fpaCompute "Fractional predicted area" ('n of occupied...
get_fpa_bCompute "Fractional predicted area" ('n of occupied...
get_ORCompute "Omission Rate"
get_or_ensembleCompute Omission Rate for a species' ensembled model
get_or_ensemble_bCompute Omission Rate for a list of species' ensembled models
get_tsaCompute species' total suitable area
get_tsa_bCompute species' total suitable area
load_thin_occLoad filtered occurrence data
loadToccLoad filtered occurrence data
make_underscriptPlot compare climatic scenarios differences between model...
mod_selModel selection and creation of MaxEnt arguments for selected...
mopExtrapolation risk analysis
mop_bExtrapolation risk analysis for a list of species
mopilow level MOP function
mopoutDetecting values out of the environmental range of M
mxnt.cCalibrate MaxEnt models based on model selection criteria
mxnt.c.batchCalibrate MaxEnt models based on model selection criteria for...
mxnt.pProject calibrated MaxEnt models
mxnt.p.batchProject calibrated MaxEnt models
mxnt.p.batch.mscnProject calibrated MaxEnt models for several species onto...
optENMevalObjLOptimize the size of ENMevaluate_b objects
plot_mdlinternal function for 'plot_mdl_diff', 'plot_scn_diff_b'
plot_mdl_diffPlot differences in suitable areas between models selected...
plotMdlDiffPlot differences in suitable areas between models selected...
plot_mdl_diff_bPlot differences in suitable areas between models selected...
plot_scninternal function for 'plot_mdl_diff', 'plot_scn_diff_b'
plot_scn_diffPlot differences in suitable areas between climatic scenarios
plotScnDiffPlot differences in suitable areas between models selected...
plot_scn_diff_bPlot differences in suitable areas between climatic scenarios...
poly.cCreate minimum convex polygon based on species occurence data
poly.c.batchCreate minimum convex polygon based on coordinates of species...
pred.aCut area for projection based on a list of SpatialPolygons
pred.a.batchCut area for projection based on a list of SpatialPolygons
pred.a.batch.mscnCut multiple projection areas (climatic scenarios) for...
pred.a.batch.rstCut projection areas of multiple species based on a single...
pred.a.batch.rst.mscnCut multiple projection areas of multiple species based on a...
pred.a.polySelect area for projection based on the extent of occ points
pred.a.poly.batchSelect area for projection based on the extent of occ points...
pred.a.rstCut a projection area based on a SpatialPolygon (e.g....
proj_mdlProject calibrated MaxEnt models
proj_mdl_bProject calibrated MaxEnt models for several species onto...
raster_overlap_bRaster overlap between models selected using different...
select_varsFind, optionally remove, highly correlated variables from a...
select_vars_bFind, optionally remove, highly correlated variables from a...
sel_envFind, optionally remove, highly correlated variables from a...
sel_env_bFind, optionally remove, highly correlated variables from a...
set_calibareaCreate minimum convex polygon based on species occurence data
set_calibarea_bCreate minimum convex polygon based on coordinates of species...
set_projareaSelect area for projection based on the extent of occ points
set_projarea_bSelect area for projection based on the extent of occ points...
split_polySplit a species occ polygon (whenever distribution seems...
thin_bSpatially thin a list of species occurrence data
thin.batchSpatially thin a list of species occurrence data
thrshldApply threshold for MaxEnt projections of a species
thrshld_bApply threshold for MaxEnt projections for multiple species
tnmThreshold names to sub
trThreshold names to sub
HemingNM/ENMwizard documentation built on July 1, 2020, 4:49 p.m.