array2df | Reshape array to data.frame |
auto_layout | Automatically select the layout. |
bffr.batch | Create buffer based on species polygons |
bind_poly | Bind list of SpatialPolygons into a single SpatialPolygons... |
buffer_b | Create buffer based on species polygons |
calib_mdl | Calibrate MaxEnt models based on model selection criteria |
calib_mdl_b | Calibrate MaxEnt models based on model selection criteria for... |
check_install_pkg | Check if package is installed and install if needed |
circle4compass_rose | Draws circle over compass rose in plotted map |
comm_gr_trait | Group taxa by trait |
comm_spatial_metric | Compute spatial metrics for each trait grouped taxa |
compass_rose | Draw north arrow in plotted map |
consensus_gr | Group climate scenarios for consensual projections |
consensus_scn | Create consensual projections of climatic scenarios |
consensus_scn_b | Create consensual projections of climatic scenarios for... |
correlated | Find highly correlated variables |
cut_calibarea_b | Cut calibration area based on a list of SpatialPolygons Use a... |
cut_projarea | Cut area for projection based on SpatialPolygons |
cut_projarea_b | Cut area for projection based on a list of SpatialPolygons |
cut_projarea_mscn_b | Cut multiple projection areas (climatic scenarios) for... |
cut_projarea_rst | Cut a projection area based on a SpatialPolygon (e.g.... |
cut_projarea_rst_b | Cut projection areas of multiple species based on a single... |
cut_projarea_rst_mscn_b | Cut multiple projection areas of multiple species based on a... |
empty2zero | Check if element is empty |
ENMevaluate_b | Tuning and evaluation of ENMs with Maxent for several species... |
ENMevaluate.batch | Tuning and evaluation of ENMs with Maxent for several species... |
ENMevaluate.l.opt | Optimize the size of ENMevaluate_b objects |
ensemble_projs | Ensemble models (AvgAIC, WAAUC, EBPM, ESORIC) |
env.cut | Cut calibration area based on a list of SpatialPolygons Use a... |
env_thin | Thinning of occurrence records using environmental... |
env_thin_b | Thinning of occurrence records using environmental... |
e_thin_algorithm | Thinning of occurrence records using environmental... |
f.area.occ.mscn | Plot differences in suitable areas between climatic scenarios |
f.args | Model selection and creation of MaxEnt arguments for selected... |
f.FPA | Compute variable contribution and permutation importance |
find_repeated_characters | Find repeated characters in a character vector |
f.OR | Compute "Fractional predicted area" ('n of occupied... |
f.thr | Apply threshold for MaxEnt projections of a species |
f.thr.batch | Apply threshold for MaxEnt projections for multiple species |
f.var.ci | Compute species' total suitable area |
get_cont_permimport | Compute variable contribution and permutation importance |
get_cont_permimport_b | Compute variable contribution and permutation importance |
get_fpa | Compute "Fractional predicted area" ('n of occupied... |
get_fpa_b | Compute "Fractional predicted area" ('n of occupied... |
get_occ_suit | Extract suitability values from all projections for known... |
get_occ_suit_b | Extract suitability values from all projections for known... |
get_OR | Compute "Omission Rate" |
get_or_ensemble | Compute Omission Rate for a species' ensembled model |
get_or_ensemble_b | Compute Omission Rate for a list of species' ensembled models |
get_rsa | Compute changes in total suitable area |
get_rsa_b | Compute changes in total suitable area for multiple species |
get_tsa | Compute species' total suitable area |
get_tsa_b | Compute total suitable area for multiple species |
is_inst | Check if package is installed |
load_calib_data_b | Load calibration areas already created |
load_env_thin_occ | Load filtered occurrence data |
load_thin_occ | Load filtered occurrence data |
loadTocc | Load filtered occurrence data |
make_underscript | Plot compare climatic scenarios differences between model... |
mask_thr_projs_mscn_b | Remove areas from projections using polygons or binary... |
mod_sel | Model selection and creation of MaxEnt arguments for selected... |
mop | Extrapolation risk analysis |
mop_b | Extrapolation risk analysis for a list of species |
mopi | low level MOP function |
mopout | Detecting values out of the environmental range of M |
mxnt.c | Calibrate MaxEnt models based on model selection criteria |
mxnt.c.batch | Calibrate MaxEnt models based on model selection criteria for... |
mxnt.p | Project calibrated MaxEnt models |
mxnt.p.batch | Project calibrated MaxEnt models |
mxnt.p.batch.mscn | Project calibrated MaxEnt models for several species onto... |
north_arrow | Draw north arrow in plotted map |
optENMevalObjL | Optimize the size of ENMevaluate_b objects |
plot_mdl | internal function for 'plot_mdl_diff', 'plot_scn_diff_b' |
plot_mdl_diff | Plot differences in suitable areas between models selected... |
plotMdlDiff | Plot differences in suitable areas between models selected... |
plot_mdl_diff_b | Plot differences in suitable areas between models selected... |
plot_scn | internal function for 'plot_mdl_diff', 'plot_scn_diff_b' |
plot_scn_diff | Plot differences in suitable areas between climatic scenarios |
plotScnDiff | Plot differences in suitable areas between models selected... |
plot_scn_diff_b | Plot differences in suitable areas between climatic scenarios... |
poly.c | Create minimum convex polygon based on species occurence data |
poly.c.batch | Create minimum convex polygon based on coordinates of species... |
pred.a | Cut area for projection based on a list of SpatialPolygons |
pred.a.batch | Cut area for projection based on a list of SpatialPolygons |
pred.a.batch.mscn | Cut multiple projection areas (climatic scenarios) for... |
pred.a.batch.rst | Cut projection areas of multiple species based on a single... |
pred.a.batch.rst.mscn | Cut multiple projection areas of multiple species based on a... |
pred.a.poly | Select area for projection based on the extent of occ points |
pred.a.poly.batch | Select area for projection based on the extent of occ points... |
pred.a.rst | Cut a projection area based on a SpatialPolygon (e.g.... |
proj_mdl | Project calibrated MaxEnt models |
proj_mdl_b | Project calibrated MaxEnt models for several species onto... |
range_shift | Map shifts in suitable areas |
range_shift_b | Map shifts in suitable areas |
raster_overlap_b | Raster overlap between models selected using different... |
rescale | Re-scale a variable to a desired range. |
select_vars | Find, optionally remove, highly correlated variables from a... |
select_vars_b | Find, optionally remove, highly correlated variables from a... |
sel_env | Find, optionally remove, highly correlated variables from a... |
sel_env_b | Find, optionally remove, highly correlated variables from a... |
set_calibarea | Create minimum convex polygon based on species occurence data |
set_calibarea_b | Create minimum convex polygon based on coordinates of species... |
set_projarea | Select area for projection based on the extent of occ points |
set_projarea_b | Select area for projection based on the extent of occ points... |
split_poly | Split a species occ polygon (whenever distribution seems... |
thin_b | Spatially thin a list of species occurrence data |
thin.batch | Spatially thin a list of species occurrence data |
thrshld | Apply threshold for MaxEnt projections of a species |
thrshld_b | Apply threshold for MaxEnt projections for multiple species |
tnm | Threshold names to sub |
tr | Threshold names to sub |
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