get_occ_suit: Extract suitability values from all projections for known...

In HemingNM/ENMwizard: Advanced Techniques for Ecological Niche Modeling Made Easy

Extract suitability values from all projections for known species occurrences of a 'mcmp' object

Description

This function will extract the suitability values from all projections of a 'mcmp' object using either the species occurrences used for niche modeling or an user supplied object with species occurrences.

Usage

get_occ_suit(mcmp, occ = NULL, ref = "current", t.all = F)

Arguments

mcmp	An object returned by proj_mdl, containing calibrated models and model projections for each species; or species "i" of a object returned by "proj_mdl_b", containing a list of calibrated models and model projections for each species
occ	Occurrence data. Argument 'p' of dismo::maxent. This can be a data.frame, matrix, SpatialPoints* object, or a vector. If p is a data.frame or matrix it represents a set of point locations; and it must have two columns with the first being the x-coordinate (longitude) and the second the y-coordinate (latitude). Coordinates can also be specified with a SpatialPoints* object If x is a data.frame, p should be a vector with a length equal to nrow(x) and contain 0 (background) and 1 (presence) values, to indicate which records (rows) in data.frame x are presence records, and which are background records
ref	Character. Name of reference projection (i.e. the one used for calibration and that will not be averaged with any other)
t.all	logical. Should threshold be applied on individual and consensus projections? Default is FALSE. Ignored if consensus projections are not found.

Examples

## Not run: 
get_occ_suit(mcmp=mxnt.mdls.preds)

## End(Not run)

HemingNM/ENMwizard documentation built on Jan. 4, 2024, 3:24 p.m.