Man pages for HenrikBengtsson/ACNE
Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
| ACNE-package | Package ACNE |
| doACNE | (ACNE) |
| fitSnpNmf | Non-negative matrix factorization (NMF) of a matrix... |
| fitSnpNmfArray | Allele-specific copy number estimation using non-negative... |
| NmfPlm | The NmfPlm class |
| NmfSnpPlm | The NmfSnpPlm class |
| Non-documented_objects | Non-documented objects |
| plot.SnpNmfFit | Generates a multi-panel plot summarizing the NMF SNP fit |
| pseudoinverse | Calculates the pseudo inverse of a matrix |
| removeOutliers | Removes outliers in matrix containing SNP signals |
| robustHInit | Robust initialization of the H (copy number) matrix |
| robustWInit | Robust initialization of the W (affinity) matrix |
| snpArrayToMatrix | Reshapes SNP data in matrix form to array form and vice versa |
| WHInit | Initialization of the W and H matrices |
