ACNE-package: Package ACNE
In HenrikBengtsson/ACNE: Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
ACNE-package R Documentation
Package ACNE
Description
A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).
Installation and updates
This package requires the aroma.affymetrix package.
To install this package, do:
install.packages("ACNE")
To get started
For a one-command pipeline, see the doACNE() method.
For other usages, see the NmfPlm class.
License
LGPL (>= 2.1)
Author(s)
Maria Ortiz, Henrik Bengtsson, Angel Rubio
References
[1] M. Ortiz-Estevez, H. Bengtsson, A. Rubio, ACNE: a summarization method to estimate allele-specific copy numbers for Affymetrix SNP arrays, Bioinformatics, 2010 [PMC2913655].
HenrikBengtsson/ACNE documentation built on Feb. 20, 2024, 8:20 p.m.
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| ACNE-package | R Documentation |
Package ACNE
Description
A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).
Installation and updates
This package requires the aroma.affymetrix package.
To install this package, do:
install.packages("ACNE")
To get started
For a one-command pipeline, see the
doACNE() method.For other usages, see the
NmfPlmclass.
License
LGPL (>= 2.1)
Author(s)
Maria Ortiz, Henrik Bengtsson, Angel Rubio
References
[1] M. Ortiz-Estevez, H. Bengtsson, A. Rubio, ACNE: a summarization method to estimate allele-specific copy numbers for Affymetrix SNP arrays, Bioinformatics, 2010 [PMC2913655].
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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