getFractionOfGenomeLost.CBS: Calculates the fraction of the genome lost, gained, or...
In HenrikBengtsson/PSCBS: Analysis of Parent-Specific DNA Copy Numbers
getFractionOfGenomeLost.CBS R Documentation
Calculates the fraction of the genome lost, gained, or aberrant either way
Description
Calculates the fraction of the genome lost, gained, or aberrant either way (in sense of total copy numbers),
using definitions closely related to those presented in [1].
Usage
## S3 method for class 'CBS'
getFractionOfGenomeLost(fit, ...)
Arguments
...
Not used.
Value
Returns a double in [0,1].
Author(s)
Henrik Bengtsson
References
[1] Fridlyand et al. Breast tumor copy number aberration
phenotypes and genomic instability, BMC Cancer, 2006.
See Also
Internally, *getCallStatistics() is used.
For more information see CBS.
HenrikBengtsson/PSCBS documentation built on Feb. 20, 2024, 9:01 p.m.
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| getFractionOfGenomeLost.CBS | R Documentation |
Calculates the fraction of the genome lost, gained, or aberrant either way
Description
Calculates the fraction of the genome lost, gained, or aberrant either way (in sense of total copy numbers), using definitions closely related to those presented in [1].
Usage
## S3 method for class 'CBS'
getFractionOfGenomeLost(fit, ...)
Arguments
... |
Not used. |
Value
Returns a double in [0,1].
Author(s)
Henrik Bengtsson
References
[1] Fridlyand et al. Breast tumor copy number aberration
phenotypes and genomic instability, BMC Cancer, 2006.
See Also
Internally, *getCallStatistics() is used.
For more information see CBS.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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