joinSegments.CBS: Joins neighboring segments such that there is no gap in...

In HenrikBengtsson/PSCBS: Analysis of Parent-Specific DNA Copy Numbers

Joins neighboring segments such that there is no gap in between them

Description

Joins neighboring segments such that there is no gap in between them. For instance, consider two neighboring segments [x1,x2] and [x3,x4] with x1 < x2 < x3 < x4. After join the segments, they are [x1,x23] and [x23,x4] where x23 = (x2 + x3)/2.

Usage

## S3 method for class 'CBS'
joinSegments(fit, range=NULL, verbose=FALSE, ...)

Arguments

range	(optional) A numeric vector of length two.
verbose	See Verbose.
...	Not used.

Details

This function assumes only chromosome exists. If more, an error will be thrown.

Value

Returns an updated CBS object.

Author(s)

Henrik Bengtsson

HenrikBengtsson/PSCBS documentation built on Feb. 20, 2024, 9:01 p.m.