R/999.NonDocumentedObjects.R

In HenrikBengtsson/aroma.Base: A generic R plugin dispatcher for BASE

###########################################################################/**
# @RdocDocumentation "Non-documented objects"
#
# % The BasePluginDispatcher class
# @alias main
# @alias BasePlugin
#
# % The BaseFile class
# @alias appendSection
# @alias getAllDataFiles
# @alias getSection
# @alias getSections
# @alias isSerial
# @alias nbrOfSections
# @alias read
# @alias removeAllDataFiles
# @alias removeSection
# @alias replaceSection
# @alias write
# @alias write.default
#
# % The BaseFileSection class
# @alias equals
# @alias print
# @alias as.list
# @alias validate
# @alias getType
# @alias setType
# @alias nbrOfHeaders
# @alias setHeader
# @alias getHeader
# @alias getHeaders
# @alias hasHeaders
# @alias addColumn
# @alias getColumns
# @alias hasColumns
# @alias setColumns
# @alias getAssayFields
# @alias hasData
# @alias getData
# @alias getDataByKeys
# @alias setData
# @alias setDataFieldByKeys
# @alias sizeOfData
#
# % The BaseFileParameters class
# @alias attachParameters 
# @alias getParameter
# @alias getParameters
# @alias nbrOfParameters
# @alias getPluginVersion
#
# % The BaseFileAssays class
# @alias getCount 
# @alias getAnnotationColumns 
# @alias getDataByIds
# @alias getId
# @alias getName
# @alias getParents 
# @alias setAnnotationColumns
# @alias setCount
# @alias setDataFieldByIds
# @alias setName
# @alias setParents
#
# % The BaseFileSpots class
# @alias getAssays
# @alias setAssays
# @alias nbrOfAssays
# @alias hasDataFiles 
# @alias getDataFiles
# @alias setDataFiles
# @alias hasSerialBioAssaySets
# @alias setDataFields
#
# % The BaseFilePlugin class
# @alias addEnumerationParameter
# @alias addEnumerationParameter.BaseFilePlugin
# @alias addParameter
# @alias addParameter.BaseFilePlugin
# @alias addUsedColumns
# @alias addUsedColumns.BaseFilePlugin
# @alias addUsedFields
# @alias addUsedFields.BaseFilePlugin
# @alias buildReports
# @alias getBaseFileSections
# @alias getBaseFileSections.BaseFilePlugin
# @alias nbrOfParameters.BaseFilePlugin
# @alias setDescription
# @alias setDescription.BaseFilePlugin
# @alias setExecName
# @alias setExecName.BaseFilePlugin
# @alias setGeneAverages
# @alias setGeneAverages.BaseFilePlugin
# @alias setMinChannels
# @alias setMinChannels.BaseFilePlugin
# @alias setSerialFormat
# @alias setSerialFormat.BaseFilePlugin
# @alias setUrl
# @alias setUrl.BaseFilePlugin
# @alias setUsedColumns
# @alias setUsedColumns.BaseFilePlugin
# @alias setUsedFields
# @alias setUsedFields.BaseFilePlugin
# @alias setVersion
# @alias setVersion.BaseFilePlugin
#
# \description{
#   This page contains aliases for all "non-documented" objects that 
#   \code{R CMD check} detects in this package. 
#
#   Almost all of them are \emph{generic} functions that have specific 
#   document for the corresponding method coupled to a specific class. 
#   Other functions are re-defined by \code{setMethodS3()} to 
#   \emph{default} methods. Neither of these two classes are non-documented
#   in reality.
#   The rest are deprecated methods.
# }
#
# @author
#
# @keyword internal
#*/###########################################################################

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# HISTORY:
# 2005-02-10
# o Created to please R CMD check.
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