Files in HenrikBengtsson/calmate

Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation

.aspell/defaults.R CONTRIBUTING.md OVERVIEW.md R/000.R R/999.NonDocumentedObjects.R R/999.package.R R/CalMaTeCalibration.R R/calmateByThetaAB.R R/calmateByTotalAndFracB.R R/fitCalMaTe.R R/fitCalMaTeCNprobes.R R/fitCalMaTeInternal.R R/fitCalMaTeMedians.R R/fitCalMaTeV1.R R/fitCalMaTeV2.R R/thetaAB2TotalAndFracB.R R/truncateFracB.R R/truncateThetaAB.R R/utils.R R/zzz.R README.md cran-comments.md inst/testScripts/publications/CalMaTe/A01.TCGA,CalMaTe.R inst/testScripts/publications/CalMaTe/A02.TCGA,CalMaTe,plots.R inst/testScripts/publications/CalMaTe/B01.GSE12702,ASCRMAv2.R inst/testScripts/publications/CalMaTe/B02.GSE12702,CalMaTe.R inst/testScripts/publications/CalMaTe/Z01.plots,byChromosome.R inst/testScripts/publications/CalMaTe/Z02.plots,segments.R inst/testScripts/publications/CalMaTe/Z03.plots,byUnits.R inst/testScripts/system/chipTypes/Mapping10K_Xba142/20120206a,CRMAv2.R inst/testScripts/system/chipTypes/Mapping10K_Xba142/20120206b,CalMaTe.R inst/testScripts/system/chipTypes/Mapping250K_Nsp,Sty/20100518a,CRMAv2.R inst/testScripts/system/chipTypes/Mapping250K_Nsp,Sty/20100518b,CalMaTe.R inst/testScripts/system/chipTypes/Mapping250K_Nsp,Sty/20100620,CalMaTe.R inst/testScripts/widgets/CalMaTe/001.include.R inst/testScripts/widgets/CalMaTe/A01.TCGA,CalMaTe.R inst/testScripts/widgets/CalMaTe/Z02.plots,segments.R man/CalMaTeCalibration.Rd man/Non-documented_objects.Rd man/calmate-package.Rd man/calmateByThetaAB.array.Rd man/calmateByTotalAndFracB.array.Rd man/fitCalMaTe.matrix.Rd man/fitCalMaTeCNprobes.matrix.Rd man/fitCalMaTeInternal.Rd man/thetaAB2TotalAndFracB.array.Rd tests/calmateByThetaAB.R tests/calmateByTotalAndFracB.R tests/fitCalMaTe.R tests/fitCalMaTeMedians.R tests/testScriptCalMaTe1.R tests/thetaAB2TotalAndFracB.R