API for InouyeLab/NetRep
Permutation Testing Network Module Preservation Across Datasets
| Global functions | |
|---|---|
| CheckFinite | Source code |
| IntermediateProperties | Source code |
| IntermediatePropertiesNoData | Source code |
| NetProps | Source code |
| NetPropsNoData | Source code |
| NetRep | Man page |
| NetRep-data | Man page |
| PermutationProcedure | Source code |
| PermutationProcedureNoData | Source code |
| Scale | Source code |
| `%nin%` | Source code |
| `%sub_in%` | Source code |
| `%sub_nin%` | Source code |
| addGradientLegend | Source code |
| any.disk.matrix | Source code |
| areColors | Source code |
| as.disk.matrix | Man page |
| as.disk.matrix,ANY-method | Man page |
| as.disk.matrix,disk.matrix-method | Man page |
| as.disk.matrix,matrix-method | Man page |
| as.matrix,disk.matrix-method | Man page |
| attach.disk.matrix | Man page Source code |
| checkIsMatrix | Source code |
| checkPlotArgs | Source code |
| combineAnalyses | Man page Source code |
| combineAnalysesInternal | Source code |
| common_params | Man page |
| contingencyTable | Source code |
| correlation.palette | Source code |
| discovery_correlation | Man page |
| discovery_data | Man page |
| discovery_network | Man page |
| disk.matrix | Man page |
| emptyPlot | Source code |
| example-data | Man page |
| filterInternalProps | Source code |
| forceLim | Source code |
| getColFromPalette | Source code |
| getModuleBreaks | Source code |
| getModuleMidPoints | Source code |
| insert.nas | Source code |
| is.disk.matrix | Man page Source code |
| load.bigMatrix | Man page Source code |
| loadIntoRAM | Source code |
| modulePreservation | Man page Source code |
| module_labels | Man page |
| netPropsInternal | Source code |
| network.palette | Source code |
| networkProperties | Man page Source code |
| nodeOrder | Man page Source code |
| nodeOrderInternal | Source code |
| orderAsNumeric | Source code |
| orderModules_param | Man page |
| permp | Source code |
| permutation | Man page |
| permutationTest | Man page Source code |
| permuted | Man page |
| pkgReqCheck | Source code |
| plotBar | Source code |
| plotContribution | Man page Source code |
| plotCorrelation | Man page Source code |
| plotData | Man page Source code |
| plotDegree | Man page Source code |
| plotModule | Man page Source code |
| plotMultiBar | Source code |
| plotNetwork | Man page Source code |
| plotProps | Source code |
| plotSquareHeatmap | Source code |
| plotSummary | Man page Source code |
| plotTopology | Man page |
| plotTriangleHeatmap | Source code |
| plot_params | Man page |
| prettyPath | Source code |
| processInput | Source code |
| requiredPerms | Man page Source code |
| sampleOrder | Man page Source code |
| sampleOrderInternal | Source code |
| serialize.table | Man page Source code |
| show,disk.matrix-method | Man page |
| simplifyList | Source code |
| simplify_param | Man page |
| sortModuleNames | Source code |
| test_correlation | Man page |
| test_data | Man page |
| test_network | Man page |
| vCat | Source code |
| verifyDatasetOrder | Source code |
