Files in InouyeLab/NetRep
Permutation Testing Network Module Preservation Across Datasets

.gitignore
ChangeLog
DESCRIPTION
NAMESPACE
R/NetRep.R R/RcppExports.R R/bigMatrix.R R/check-user-input.R R/contingency.R R/disk-matrix-class.R R/example-data.R R/modulePreservation.R R/multi-machine.R R/networkProperties.R R/orderNodes.R R/orderSamples.R R/plot-functions.R R/plot-module.R R/plot-topology.R R/plot-utils.R R/pperm.R R/roxygen-defs.R R/utils.R README.md
data/NetRep.rda
inst/CITATION
man/NetRep.Rd man/bigMatrix.Rd man/combineAnalyses.Rd man/common_params.Rd man/disk.matrix.Rd man/example-data.Rd man/modulePreservation.Rd man/networkProperties.Rd man/nodeOrder.Rd man/orderModules_param.Rd man/permutationTest.Rd man/plotModule.Rd man/plotTopology.Rd man/plot_params.Rd man/requiredPerms.Rd man/sampleOrder.Rd man/simplify_param.Rd
src/Makevars
src/Makevars.win
src/NetRep_types.h
src/RcppExports.cpp
src/checkFinite.cpp
src/discProps.cpp
src/interrupt.cpp
src/interrupt.h
src/netStats.cpp
src/netStats.h
src/permutations.cpp
src/permutationsNoData.cpp
src/properties.cpp
src/scale.cpp
src/scale.h
src/thread-utils.cpp
src/thread-utils.h
src/utils.cpp
src/utils.h
tests/testthat.R tests/testthat/test1-main.R tests/testthat/test2-downstream-analysis.R vignettes/NetRep.R vignettes/NetRep.Rmd
vignettes/NetRep.html
vignettes/NetRep.md
vignettes/NetRep_files/figure-html/correlation_heatmap-1.png
vignettes/NetRep_files/figure-html/disk_matrix_dry_run-1.png
vignettes/NetRep_files/figure-html/disk_matrix_plot-1.png
vignettes/NetRep_files/figure-html/dry_run-1.png
vignettes/NetRep_files/figure-html/dry_run_customised-1.png
vignettes/NetRep_files/figure-html/mean_degree-1.png
vignettes/NetRep_files/figure-html/mean_degree_customised-1.png
vignettes/NetRep_files/figure-html/modules_in_discovery-1.png
vignettes/NetRep_files/figure-html/modules_in_test-1.png
vignettes/NetRep_files/img/mod1.png
vignettes/NetRep_files/img/preservation.png
InouyeLab/NetRep documentation built on Aug. 15, 2017, 11:11 p.m.