Man pages for JGCRI/gcamland
GCAM Land Allocation Module
| AdaptiveExpectation_calcExpectedPrice | AdaptiveExpectation_calcExpectedPrice |
| AdaptiveExpectation_calcExpectedYield | AdaptiveExpectation_calcExpectedYield |
| add_parameter_data | Add model parameter values to a table of model results |
| AgProductionTechnology_calcProfitRate | AgProductionTechnology_calcProfitRate |
| AgProductionTechnology_initCalc | AgProductionTechnology_initCalc |
| AgProductionTechnology_setup | AgProductionTechnology_setup |
| as.ScenarioInfo | Convert an object to a 'ScenarioInfo' object |
| calc_adaptive_expectation | Compute autoregressive model for expectation |
| calc_loglikelihood | Compute the log-likelihoods for each data point |
| calc_post | Compute the log-likelihood and log-posteriors for a set of... |
| calc_prior | Compute the log-prior for a paremeter set |
| ChoiceFunction | ChoiceFunction |
| EV | Calculate the parameter expectation values for a collection... |
| ev_single | Helper function for EV |
| export_results | Export scenario results as a csv file |
| extract_pointwise_loglike | Extract the pointwise log likelihood values from a... |
| extract_post_vector | Extract the posterior vector for the samples in a... |
| gcamland | gcamland: A stand-alone implementation of the GCAM land... |
| gen_ensemble_member | Generate the ensemble members for a single set of parameters |
| get_AgProdChange | get_AgProdChange |
| get_hindcast_AgProdChange | get_hindcast_AgProdChange |
| get_hindcast_prices | get_hindcast_prices |
| get_historical_land_data | Get historical land use data |
| get_historic_yield_ratios | get_historic_yield_ratios |
| get_historic_yields | get_historic_yields |
| get_lpdf | Select a log-probability density function |
| getNest | Construct a table of land node nestings |
| get_PCHES_results | get_PCHES_results |
| get_per_to_yr | get_per_to_yr |
| get_prices | get_prices |
| get_saved_share_weights | get_saved_share_weights |
| get_scenario_land_data | Load land use results for a list of already-run scenarios |
| getScenName | getScenName |
| getStartYear | getStartYear |
| get_timestep | get_timestep |
| get_yr_to_per | get_yr_to_per |
| grand_table_bayes | Organize a list of ScenarioInfo objects into a grand table of... |
| grand_table_objective | Organize a list of ScenarioInfo objects that have been... |
| HPDI | Calculate highest posterior density interval (HPDI) for a set... |
| is.ScenarioInfo | Test whether an object is a 'ScenarioInfo' object |
| LandAllocator | LandAllocator |
| LandAllocator_addChild | LandAllocator_addChild |
| LandAllocator_addToNest | LandAllocator_addToNest |
| LandAllocator_calcFinalLandAllocation | LandAllocator_calcFinalLandAllocation |
| LandAllocator_calcLandAllocation | LandAllocator_calcLandAllocation |
| LandAllocator_calcLandShares | LandAllocator_calcLandShares |
| LandAllocator_calculateNodeProfitRates | LandAllocator_calculateNodeProfitRates |
| LandAllocator_calculateShareWeights | LandAllocator_calculateShareWeights |
| LandAllocator_calibrateLandAllocator | LandAllocator_calibrateLandAllocator |
| LandAllocator_getLandShares | LandAllocator_getLandShares |
| LandAllocator_getOutputs | LandAllocator_getOutputs |
| LandAllocator_initCalc | LandAllocator_initCalc |
| LandAllocator_setInitShares | LandAllocator_setInitShares |
| LandAllocator_setUnmanagedLandProfitRate | LandAllocator_setUnmanagedLandProfitRate |
| LandAllocator_setup | LandAllocator_setup |
| Land_history | Historical land use data |
| LandLeaf | LandLeaf |
| LandLeaf_calcLandAllocation | LandLeaf_calcLandAllocation |
| LandLeaf_calcLandShares | LandLeaf_calcLandShares |
| LandLeaf_calculateShareWeights | LandLeaf_calculateShareWeights |
| LandLeaf_getCalLandAllocation | LandLeaf_getCalLandAllocation |
| LandLeaf_getOutputs | LandLeaf_getOutputs |
| LandLeaf_initCalc | LandLeaf_initCalc |
| LandLeaf_setInitShares | LandLeaf_setInitShares |
| LandNode | LandNode |
| LandNode_addChild | LandNode_addChild |
| LandNode_addToNest | LandNode_addToNest |
| LandNode_calcLandAllocation | LandNode_calcLandAllocation |
| LandNode_calcLandShares | LandNode_calcLandShares |
| LandNode_calculateNodeProfitRates | LandNode_calculateNodeProfitRates |
| LandNode_calculateShareWeight | LandNode_calculateShareWeight |
| LandNode_calculateShareWeights | LandNode_calculateShareWeights |
| LandNode_getCalLandAllocation | LandNode_getCalLandAllocation |
| LandNode_getChildWithHighestShare | LandNode_getChildWithHighestShare |
| LandNode_getLandShares | LandNode_getLandShares |
| LandNode_getObservedAverageProfitRate | LandNode_getObservedAverageProfitRate |
| LandNode_getOutputs | LandNode_getOutputs |
| LandNode_initCalc | LandNode_initCalc |
| LandNode_setInitShares | LandNode_setInitShares |
| LandNode_setUnmanagedLandProfitRate | LandNode_setUnmanagedLandProfitRate |
| LandNode_setup | LandNode_setup |
| Leaf_setup | Leaf_setup |
| LinearExpectation_calcExpectedPrice | LinearExpectation_calcExpectedPrice |
| LinearExpectation_calcExpectedYield | LinearExpectation_calcExpectedYield |
| LN1_setup | LN1_setup |
| log_sum | Compute the log of the sum of values given as logs |
| lppd | Compute the log pointwise predictive density for a single... |
| MAP_bayes | Calculate MAP (maximum a posteriori) estimates for a... |
| minimize_objective | Calculate parameters than minimize objective function of... |
| outdir_setup | Set up output directories |
| PCHES.SCENARIO.INFO | PCHES.SCENARIO.INFO |
| PerfectExpectation_calcExpectedPrice | PerfectExpectation_calcExpectedPrice |
| PerfectExpectation_calcExpectedYield | PerfectExpectation_calcExpectedYield |
| plotLandAllocation | plotLandAllocation |
| plotNest | plotNest |
| plotRegionalLandAllocation | plotRegionalLandAllocation |
| pointwise_loglike | Return pointwise log likelihood density for all samples in a... |
| PRICES | Price tables for each scenario type. |
| printAllOutputs | printAllOutputs |
| printDebug | Write out additional information for debugging |
| printLandShares | printLandShares |
| printNest | printNest |
| printOutput | printLandAllocation |
| printPrices | printPrices |
| pwaic | Compute the effective number of parameters 'pwaic' for a... |
| ReadData_AgProd | ReadData_AgProd |
| ReadData_LN0 | ReadData_LN0 |
| ReadData_LN1_LeafChildren | ReadData_LN1_LeafChildren |
| ReadData_LN1_Node | ReadData_LN1_Node |
| ReadData_LN2_LandLeaf | ReadData_LN2_LandLeaf |
| ReadData_LN2_Node | ReadData_LN2_Node |
| ReadData_LN2_UnmanagedLandLeaf | ReadData_LN2_UnmanagedLandLeaf |
| ReadData_LN3_GhostShare | ReadData_LN3_GhostShare |
| ReadData_LN3_LandLeaf | ReadData_LN3_LandLeaf |
| ReadData_LN3_NewTech | ReadData_LN3_NewTech |
| ReadData_LN3_Node | ReadData_LN3_Node |
| ReadData_LN3_UnmanagedLandLeaf | ReadData_LN3_UnmanagedLandLeaf |
| RelativeCostLogit_calcImpliedCost | RelativeCostLogit_calcImpliedCost |
| RelativeCostLogit_calcShareWeight | RelativeCostLogit_calcShareWeight |
| RelativeCostLogit_calcUnnormalizedShare | RelativeCostLogit_calcUnnormalizedShare |
| RelativeCostLogit_getMinCostThreshold | RelativeCostLogit_getMinCostThreshold |
| REQD.SUBDIRS | Required subdirectories for output directory |
| run_bayes | Run all the Bayesian analysis on a list of scenarios |
| run_ensemble | Run an ensemble of offline land models; by default, no... |
| run_ensemble_bayes | Run an ensemble of offline land models and complete Bayesian... |
| run_model | Run the GCAM land model |
| run_objective | Run user-specified objective function evaluations on a list... |
| ScenarioInfo | ScenarioInfo constructor |
| SCENARIO.INFO | SCENARIO.INFO |
| Sector_initCalc | Sector_initCalc |
| SectorUtils_normalizeShares | SectorUtils_normalizeShares |
| softmax | Compute the softmax function of a vector |
| SRB.SCENARIO.INFO | SRB.SCENARIO.INFO |
| Subsector_initCalc | Subsector_initCalc |
| sumx | Sum values, minimizing roundoff error |
| UnmanagedLandLeaf | UnmanagedLandLeaf |
| UnmanagedLandLeaf_initCalc | UnmanagedLandLeaf_initCalc |
| UnmanagedLandLeaf_setUnmanagedLandProfitRate | UnmanagedLandLeaf_setUnmanagedLandProfitRate |
| update_scen_info | update_scen_info |
| waic | Compute the WAIC for a list of scenarios |
| YIELD.RATIOS | Ratio of Yield to First Historical Year |
| YIELDS.HIST | Historic FAO Yields |
