API for JMacDonaldPhD/Epidemics
Inference For Epidemics (one line, title case)
| Global functions | |
|---|---|
| ASIS.sampler | Source code Source code |
| Centered_MCMC | Source code |
| Contact_Kernel | Man page Source code |
| Contact_Kernel2 | Source code |
| Deterministic_Gillespie1 | Source code Source code |
| Deterministic_Gillespie2 | Source code Source code |
| Epidemic_Gillespie | Source code Source code |
| Epidemic_Gillespie_transisitions | Source code Source code |
| Epidemic_Simulation | Source code Source code |
| Epidemic_fsMCMC | Man page Source code |
| Epidemic_fsMCMC_seeds | Source code Source code |
| General_Epidemic_Process | Man page Source code |
| Homo_HighPop_HighR0 | Man page |
| Homo_HighPop_LowR0 | Man page |
| Homo_HighPop_MedR0 | Man page |
| Homo_LowPop_HighR0 | Man page |
| Homo_LowPop_LowR0 | Man page |
| Homo_LowPop_MedR0 | Man page |
| Homo_MedPop_HighR0 | Man page |
| Homo_MedPop_LowR0 | Man page |
| Homo_MedPop_MedR0 | Man page |
| Homogeneous_Kernel | Man page Source code |
| IP_t | Man page Source code |
| Infectious_Disease_Gillespie | Man page Source code |
| Logistic_EC | Source code Source code |
| Logistic_Epidemic | Source code Source code |
| Logistic_end | Source code Source code |
| Logistic_group_epidemic | Source code Source code |
| Logistic_max_EC | Source code Source code |
| Logistic_y_t | Source code Source code |
| MCMCplots | Man page Source code |
| NonCentered_MCMC | Man page Source code |
| PM_MCMCexperiment | Man page Source code |
| PNC.Algorithm | Man page Source code |
| Pseudo_Marginal_MCMC | Man page Source code |
| RWMSampler | Man page Source code |
| SIR_Gillespie | Man page Source code |
| SIR_PM_MCMCexperiment1 | Man page Source code |
| SIR_PseudoMarginalMCMC | Man page Source code |
| SIR_fsMCMC_blockedIS | Man page Source code |
| SIRfsMCMCexperiment1 | Man page Source code |
| SIS_Gillespie | Man page Source code |
| SIS_PseudoMarginalMCMC | Man page Source code |
| SIS_fsMCMC | Man page Source code |
| SIS_fsMCMC_beta | Man page Source code |
| SIS_fsMCMC_blockedIS | Man page Source code |
| SIS_fsMCMC_oneProposal | Man page Source code |
| SIS_y_soln | Man page Source code |
| SISfsMCMCexperiment | Man page Source code |
| Spatial_Kernel | Source code |
| adaptiveSIR_PseudoMarginalMCMC | Man page Source code |
| adaptiveSIRfsMCMC7_blockedIS | Man page Source code |
| adaptiveSIS_PseudoMarginalMCMC | Man page Source code |
| adaptiveSISfsMCMC | Man page Source code |
| adaptiveSISfsMCMC7_blockedIS | Man page Source code |
| calling_c | Source code |
| concat | Source code |
| dHyperGeom | Man page Source code |
| end_state | Source code |
| epidemicImportanceSampler | Man page Source code |
| epidemic_loglikelihood | Man page Source code |
| event.epidemics | Source code |
| event_epidemicsC | Source code |
| fsMCMC.epidemics | Source code |
| fsMCMC_SIS | Man page Source code |
| fsMCMC_sim | Source code |
| gillespie_panel_transitions | Source code Source code |
| gillespie_transitions | Source code Source code |
| gillespie_transitions_simplify | Source code Source code |
| heterogeneousSIR_Gillespie | Man page Source code |
| homogeneousPanelDataSIR_Gillespie | Man page Source code |
| homogeneousPanelDataSIR_GillespieEU | Man page Source code |
| homogeneousPanelDataSIS_Gillespie | Man page Source code |
| homogeneousPanelDataSIS_GillespieEU | Man page Source code |
| homogeneousSIR_Gillespie | Man page Source code |
| individualHomogeneousSIR_Gillespie | Man page Source code |
| individualHomogeneousSIS_Gillespie | Man page Source code |
| inf_time_proposal | Man page Source code |
| integral_part_inf | Source code |
| interval_intersect | Man page Source code |
| interval_transitions | Source code Source code |
| log_likelihood_inf | Source code |
| log_likelihood_rem | Man page Source code |
| new_states | Source code Source code |
| next_infection | Source code Source code |
| oneParticlePM_SIS | Man page Source code |
| oneParticlePM_SIS_beta | Man page Source code |
| panelDataSIR_Gillespie | Man page Source code |
| panelDataSample | Source code |
| panel_data.epidemics | Source code |
| panel_data_new.epidemics | Man page Source code |
| pi_Y_given_X | Man page Source code |
| pi_Y_given_theta_hat | Source code |
| plot.epidemic | Man page Source code |
| possible_transitions | Man page Source code |
| printed_output | Source code |
| prod_part_inf | Man page Source code |
| prod_part_infC | Source code |
| rates | Man page Source code |
| relevant_rates | Man page Source code |
| start_state | Man page Source code |
| state | Man page Source code |
| state_table | Man page Source code |
| time_to_next_event | Man page Source code |
| transitionData | Man page Source code |
| transition_table.epidemics | Source code |
| transitions_between_observations | Source code Source code |
| which_event | Man page Source code |
