API for JamesStimson/transcluster
Transmission clustering using SNPs and sample dates
| Global functions | |
|---|---|
| Integrand | Source code |
| ProbHeight | Source code |
| ProbHeightGamma | Source code |
| ProbKTransmissions | Source code |
| ProbTrans | Source code |
| clusterTimedTree | Man page Source code |
| compareClusters | Man page Source code |
| convertToClueFormat | Source code |
| createModel | Man page Source code |
| cutoffLevel | Man page Source code |
| getClusters | Source code |
| getClustersNonRecursive | Source code |
| isConnected | Source code |
| makeClustersFromSims | Source code |
| makeKnownTransClusters | Source code |
| makeSNPClusters | Man page Source code |
| makeTransClusters | Man page Source code |
| makeTransClustersFromSims | Source code |
| makeTransClustersResist | Man page Source code |
| nTransCutoff | Man page Source code |
| plotClusters | Man page Source code |
| plotSNPClusters | Man page Source code |
| plotTransClusters | Man page Source code |
| plotTransClustersSpatial | Man page Source code |
| regionColour | Man page Source code |
| regionWeight | Man page Source code |
| setCutoffs | Man page Source code |
| setCutoffsResist | Man page Source code |
| setCutoffsSpatial | Man page Source code |
| setDatesFromFile | Man page Source code |
| setParams | Man page Source code |
| setRegionColours | Man page Source code |
| setRegionLabels | Man page Source code |
| setRegionWeights | Man page Source code |
| setRegionsFromFile | Man page Source code |
| setSNPFromFile | Man page Source code |
| setSNPResistFromFile | Man page Source code |
| setSNPThresholds | Man page Source code |
| setTransMatrixFromFile | Man page Source code |
| setTransThresholds | Man page Source code |
| withinCluster | Man page Source code |
| writeClusterFile | Source code |
