predictCross: Predicts offspring distributions resulting from a cross...

In JanEngelstaedter/peas: Predicting patterns of Mendelian inheritance

Description

Predicts offspring distributions resulting from a cross between two genotypes.

Usage

predictCross(genopheno, mom, dad, equivalent = "phase",
  output = "both")

Arguments

genopheno	genopheno object specifying the genetic setup.
mom	Genotype of the mother.
dad	Genotype of the father.
equivalent	Argument determining which genotypes are to be treated as equivalent. Possible options are "phase" (genotypes that differ only by phase are equivalent, i.e. the order of alleles within a locus does not matter), "origin" (phase is important but not the origin of alleles), and "none" (no two genotypes are equivalent).
output	Specifies what the function should return: 'genotypes' returns the distribution of offspring genotypes, 'phenotypes' returns the distribution of offspring phenotypes, and 'both' returns both distributions.

Value

Depending on the output argument, a dataframe containing the distribution of offspring genotypes, a dataframe containing the distribution of offspring phenotypes, or both (combined in a list).

Examples

MendelsPeas <- newGenopheno(alleleNames = list(c('Y', 'y')))
MendelsPeas <- setPhenotypes(MendelsPeas, 'colour', 'Y_', 'yellow')
MendelsPeas <- setPhenotypes(MendelsPeas, 'colour', 'yy', 'green')
predictCross(MendelsPeas, 'YY', 'yy')
predictCross(MendelsPeas, 'Yy', 'Yy')

JanEngelstaedter/peas documentation built on May 5, 2019, 1:33 a.m.