setPhenotypes: Set trait values for one or several genotypes.

In JanEngelstaedter/peas: Predicting patterns of Mendelian inheritance

Description

Set trait values for one or several genotypes.

Usage

setPhenotypes(genopheno, traitName, genotypes, traitValue,
  equivalent = "phase")

Arguments

genopheno	genopheno object specifying the genetic setup.
traitName	The name of the trait whose values are to be set.
genotypes	A vector of strings specifying genotypes.
traitValue	The trait value.
equivalent	Argument determining which genotypes are to be treated as equivalent. Possible options are "phase" (genotypes that differ only by phase are equivalent, i.e. the order of alleles within a locus does not matter), "origin" (phase is important but not the origin of alleles), and "none" (no two genotypes are equivalent).

Value

genopheno object with trait information added.

Examples

MendelsPeas <- newGenopheno(nloci = 1, alleleNames = list(c('Y', 'y')))
MendelsPeas <- setPhenotypes(MendelsPeas, 'colour', 'Y_', 'yellow')
MendelsPeas <- setPhenotypes(MendelsPeas, 'colour', 'yy', 'green')
getPhenotypes(MendelsPeas)

JanEngelstaedter/peas documentation built on May 5, 2019, 1:33 a.m.