ORFik-package: ORFik for analysis of open reading frames.
In JokingHero/ORFik: Open Reading Frames in Genomics
ORFik-package R Documentation
ORFik for analysis of open reading frames.
Description
Main goals:
Finding Open Reading Frames (very fast) in the genome of interest or
on the set of transcripts/sequences.
Utilities for metaplots of RiboSeq coverage over gene START and STOP
codons allowing to spot the shift.
Shifting functions for the RiboSeq data.
Finding new Transcription Start Sites with the use of CageSeq data.
Various measurements of gene identity e.g. FLOSS, coverage, ORFscore,
entropy that are recreated based on many scientific publications.
Utility functions to extend GenomicRanges for faster grouping,
splitting, tiling etc.
Author(s)
Maintainer: Haakon Tjeldnes hauken_heyken@hotmail.com [data contributor]
Authors:
Kornel Labun kornellabun@gmail.com [copyright holder]
Other contributors:
Michal Swirski michal.swirski@uw.edu.pl [contributor]
Katarzyna Chyzynska katchyz@gmail.com [contributor, data contributor]
Yamila Torres Cleuren yamilatorrescleuren@gmail.com [contributor, thesis advisor]
Eivind Valen eivind.valen@gmail.com [thesis advisor, funder]
See Also
Useful links:
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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| ORFik-package | R Documentation |
ORFik for analysis of open reading frames.
Description
Main goals:
Finding Open Reading Frames (very fast) in the genome of interest or on the set of transcripts/sequences.
Utilities for metaplots of RiboSeq coverage over gene START and STOP codons allowing to spot the shift.
Shifting functions for the RiboSeq data.
Finding new Transcription Start Sites with the use of CageSeq data.
Various measurements of gene identity e.g. FLOSS, coverage, ORFscore, entropy that are recreated based on many scientific publications.
Utility functions to extend GenomicRanges for faster grouping, splitting, tiling etc.
Author(s)
Maintainer: Haakon Tjeldnes hauken_heyken@hotmail.com [data contributor]
Authors:
Kornel Labun kornellabun@gmail.com [copyright holder]
Other contributors:
Michal Swirski michal.swirski@uw.edu.pl [contributor]
Katarzyna Chyzynska katchyz@gmail.com [contributor, data contributor]
Yamila Torres Cleuren yamilatorrescleuren@gmail.com [contributor, thesis advisor]
Eivind Valen eivind.valen@gmail.com [thesis advisor, funder]
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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