coverageByTranscriptC: coverageByTranscript with coverage input
In JokingHero/ORFik: Open Reading Frames in Genomics
coverageByTranscriptC R Documentation
coverageByTranscript with coverage input
Description
Extends the function with direct genome coverage input,
see coverageByTranscript for original function.
Usage
coverageByTranscriptC(x, transcripts, ignore.strand = !strandMode(x))
Arguments
x
a covRle (one RleList for each strand in object),
must have defined and correct
seqlengths in its SeqInfo object.
transcripts
GRangesList
ignore.strand
a logical (default: length(x) == 1)
Value
Integer Rle of coverage, 1 per transcript
JokingHero/ORFik documentation built on Oct. 21, 2024, 11:42 a.m.
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| coverageByTranscriptC | R Documentation |
coverageByTranscript with coverage input
Description
Extends the function with direct genome coverage input,
see coverageByTranscript for original function.
Usage
coverageByTranscriptC(x, transcripts, ignore.strand = !strandMode(x))
Arguments
x |
a covRle (one RleList for each strand in object), must have defined and correct seqlengths in its SeqInfo object. |
transcripts |
|
ignore.strand |
a logical (default: length(x) == 1) |
Value
Integer Rle of coverage, 1 per transcript
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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