downstreamOfPerGroup: Get rest of objects downstream (exclusive)
In JokingHero/ORFik: Open Reading Frames in Genomics
downstreamOfPerGroup R Documentation
Get rest of objects downstream (exclusive)
Description
Per group get the part downstream of position.
downstreamOfPerGroup(tx, stopSites(cds, asGR = TRUE))
will return the 3' utrs per transcript as GRangesList,
usually used for interesting
parts of the transcripts.
Usage
downstreamOfPerGroup(tx, downstreamOf)
Arguments
tx
a GRangesList,
usually of Transcripts to be changed
downstreamOf
a vector of integers, for each group in tx, where
is the new start point of first valid exon. Can also be a GRangesList,
then stopsites will be used.
Details
If you want to include the points given in the region,
use downstreamFromPerGroup
Value
a GRangesList of downstream part
See Also
Other GRanges:
assignFirstExonsStartSite(),
assignLastExonsStopSite(),
downstreamFromPerGroup(),
upstreamFromPerGroup(),
upstreamOfPerGroup()
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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| downstreamOfPerGroup | R Documentation |
Get rest of objects downstream (exclusive)
Description
Per group get the part downstream of position. downstreamOfPerGroup(tx, stopSites(cds, asGR = TRUE)) will return the 3' utrs per transcript as GRangesList, usually used for interesting parts of the transcripts.
Usage
downstreamOfPerGroup(tx, downstreamOf)
Arguments
tx |
a |
downstreamOf |
a vector of integers, for each group in tx, where is the new start point of first valid exon. Can also be a GRangesList, then stopsites will be used. |
Details
If you want to include the points given in the region, use downstreamFromPerGroup
Value
a GRangesList of downstream part
See Also
Other GRanges:
assignFirstExonsStartSite(),
assignLastExonsStopSite(),
downstreamFromPerGroup(),
upstreamFromPerGroup(),
upstreamOfPerGroup()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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