exonsWithPseudoIntronsPerGroup: Get exons with pseudo introns per Group
| exonsWithPseudoIntronsPerGroup | R Documentation |
Get exons with pseudo introns per Group
Description
If an intron is of length < 'width' * 2, it will not be split into pseudo.
Usage
exonsWithPseudoIntronsPerGroup(grl, width = 100)
Arguments
grl |
a GrangesList of length 1 |
width |
numeric, default 100. The size of pseudo flanks. |
Value
a GRangesList
Examples
tx <- GRangesList(GRanges("1", IRanges(c(1, 150, 1e5, 1e6)), "+"))
exonsWithPseudoIntronsPerGroup(tx) # See intron 1 is not split
tx_2 <- rep(GRangesList(GRanges("1", IRanges(c(1, 150, 1e5, 1e6)), "+")), 2)
exonsWithPseudoIntronsPerGroup(tx_2)
tx_3 <- tx_2
names(tx_3) <- c("tx1", "tx2")
exonsWithPseudoIntronsPerGroup(tx_3, 1e6)
