experiment.colors: Decide color for libraries by grouping
In JokingHero/ORFik: Open Reading Frames in Genomics

experiment.colors

R Documentation

Decide color for libraries by grouping

Description

Pick the grouping wanted for colors, by default only group by libtype. Like RNA-seq(skyblue4) and Ribo-seq(orange).

Usage

experiment.colors(
  df,
  color_list = "default",
  skip.libtype = FALSE,
  skip.stage = TRUE,
  skip.replicate = TRUE,
  skip.fraction = TRUE,
  skip.condition = TRUE
)

Arguments

`df`	an ORFik `experiment`
`color_list`	a character vector of colors, default "default". That is the vector c("skyblue4", 'orange', "green", "red", "gray", "yellow", "blue", "red2", "orange3"). Picks number of colors needed to make groupings have unique color
`skip.libtype`	a logical (FALSE), don't include libtype
`skip.stage`	a logical (FALSE), don't include stage in variable name.
`skip.replicate`	a logical (FALSE), don't include replicate in variable name.
`skip.fraction`	a logical (FALSE), don't include fraction
`skip.condition`	a logical (FALSE), don't include condition in variable name.