export.bedo: Store GRanges object as .bedo
In JokingHero/ORFik: Open Reading Frames in Genomics
View source: R/utils_exports.R
export.bedo R Documentation
Store GRanges object as .bedo
Description
.bedo is .bed ORFik, an optimized bed format for coverage reads with
read lengths .bedo is a text based format with columns (6 maximum):
1. chromosome
2. start
3. end
4. strand
5. ref width (cigar # M's, match/mismatch total)
6. duplicates of that read
Usage
export.bedo(object, out)
Arguments
object
a GRanges object
out
a character, location on disc (full path)
Details
Positions are 1-based, not 0-based as .bed.
End will be removed if all ends equals all starts.
Import with import.bedo
Value
NULL, object saved to disc
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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View source: R/utils_exports.R
| export.bedo | R Documentation |
Store GRanges object as .bedo
Description
.bedo is .bed ORFik, an optimized bed format for coverage reads with
read lengths .bedo is a text based format with columns (6 maximum):
1. chromosome
2. start
3. end
4. strand
5. ref width (cigar # M's, match/mismatch total)
6. duplicates of that read
Usage
export.bedo(object, out)
Arguments
object |
a GRanges object |
out |
a character, location on disc (full path) |
Details
Positions are 1-based, not 0-based as .bed. End will be removed if all ends equals all starts. Import with import.bedo
Value
NULL, object saved to disc
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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