filterUORFs: Remove uORFs that are false CDS hits
In JokingHero/ORFik: Open Reading Frames in Genomics
filterUORFs R Documentation
Remove uORFs that are false CDS hits
Description
This is a strong filtering, so that even if the cds is on another transcript
, the uORF is filtered out, this is because there is no way of knowing by
current ribo-seq, rna-seq experiments.
Usage
filterUORFs(uorfs, cds)
Arguments
uorfs
(GRangesList), the uORFs to filter
cds
(GRangesList), the coding sequences (main ORFs on transcripts),
to filter against.
Value
(GRangesList) of filtered uORFs
See Also
Other uorfs:
addCdsOnLeaderEnds(),
removeORFsWithSameStartAsCDS(),
removeORFsWithSameStopAsCDS(),
removeORFsWithStartInsideCDS(),
removeORFsWithinCDS(),
uORFSearchSpace()
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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| filterUORFs | R Documentation |
Remove uORFs that are false CDS hits
Description
This is a strong filtering, so that even if the cds is on another transcript , the uORF is filtered out, this is because there is no way of knowing by current ribo-seq, rna-seq experiments.
Usage
filterUORFs(uorfs, cds)
Arguments
uorfs |
(GRangesList), the uORFs to filter |
cds |
(GRangesList), the coding sequences (main ORFs on transcripts), to filter against. |
Value
(GRangesList) of filtered uORFs
See Also
Other uorfs:
addCdsOnLeaderEnds(),
removeORFsWithSameStartAsCDS(),
removeORFsWithSameStopAsCDS(),
removeORFsWithStartInsideCDS(),
removeORFsWithinCDS(),
uORFSearchSpace()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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