findNGSPairs: Find pair of forward and reverse strand wig / bed files and...

In JokingHero/ORFik: Open Reading Frames in Genomics

Find pair of forward and reverse strand wig / bed files and paired end bam files split in two

Description

Find pair of forward and reverse strand wig / bed files and paired end bam files split in two

Usage

findNGSPairs(
  paths,
  f = c("forward", "fwd"),
  r = c("reverse", "rev"),
  format = "wig"
)

Arguments

paths	a character path at least one .wig / .bed file
f	Default (c("forward", "fwd") a character vector for forward direction regex.
r	Default (c("reverse", "rev") a character vector for reverse direction regex.
format	default "wig", for bed do "bed". Also searches compressions of these variants.

Value

if not all are paired, return original list, if they are all paired, return a data.table with matches as 2 columns

JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.