findNewTSS: Finds max peaks per trancsript from reads in the cagefile
In JokingHero/ORFik: Open Reading Frames in Genomics
View source: R/cage_annotations.R
findNewTSS R Documentation
Finds max peaks per trancsript from reads in the cagefile
Description
Finds max peaks per trancsript from reads in the cagefile
Usage
findNewTSS(fiveUTRs, cageData, extension, restrictUpstreamToTx)
Arguments
fiveUTRs
The 5' leader sequences as GRangesList
cageData
The CAGE as GRanges object
extension
The number of basses to extends transcripts upstream.
restrictUpstreamToTx
a logical (FALSE), if you want to restrict
leaders to not extend closer than 5 bases from closest upstream leader,
set this to TRUE.
Value
a Hits object
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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View source: R/cage_annotations.R
| findNewTSS | R Documentation |
Finds max peaks per trancsript from reads in the cagefile
Description
Finds max peaks per trancsript from reads in the cagefile
Usage
findNewTSS(fiveUTRs, cageData, extension, restrictUpstreamToTx)
Arguments
fiveUTRs |
The 5' leader sequences as GRangesList |
cageData |
The CAGE as GRanges object |
extension |
The number of basses to extends transcripts upstream. |
restrictUpstreamToTx |
a logical (FALSE), if you want to restrict leaders to not extend closer than 5 bases from closest upstream leader, set this to TRUE. |
Value
a Hits object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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