hasHits: Hits from reads
In JokingHero/ORFik: Open Reading Frames in Genomics
View source: R/feature_helpers.R
hasHits R Documentation
Hits from reads
Description
Finding GRanges groups that have overlap hits with reads
Similar to
Usage
hasHits(grl, reads, keep.names = FALSE, overlaps = NULL)
Arguments
grl
a GRangesList or GRanges object
reads
a GRanges, GAlignment or GAlignmentPairs object
keep.names
logical (F), keep names or not
overlaps
default NULL, if not null must be
countOverlaps(grl, reads), input if you have it already.
Value
a list of logicals, T == hit, F == no hit
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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View source: R/feature_helpers.R
| hasHits | R Documentation |
Hits from reads
Description
Finding GRanges groups that have overlap hits with reads Similar to
Usage
hasHits(grl, reads, keep.names = FALSE, overlaps = NULL)
Arguments
grl |
a |
reads |
a GRanges, GAlignment or GAlignmentPairs object |
keep.names |
logical (F), keep names or not |
overlaps |
default NULL, if not null must be countOverlaps(grl, reads), input if you have it already. |
Value
a list of logicals, T == hit, F == no hit
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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