import.bedo: Load GRanges object from .bedo
In JokingHero/ORFik: Open Reading Frames in Genomics
View source: R/utils_imports.R
import.bedo R Documentation
Load GRanges object from .bedo
Description
.bedo is .bed ORFik, an optimized bed format for coverage reads with read lengths
.bedo is a text based format with columns (6 maximum):
1. chromosome
2. start
3. end
4. strand
5. ref width (cigar # M's, match/mismatch total)
6. duplicates of that read
Usage
import.bedo(path)
Arguments
path
a character, location on disc (full path)
Details
Positions are 1-based, not 0-based as .bed.
export with export.bedo
Value
GRanges object
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
R Package Documentation
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View source: R/utils_imports.R
| import.bedo | R Documentation |
Load GRanges object from .bedo
Description
.bedo is .bed ORFik, an optimized bed format for coverage reads with read lengths
.bedo is a text based format with columns (6 maximum):
1. chromosome
2. start
3. end
4. strand
5. ref width (cigar # M's, match/mismatch total)
6. duplicates of that read
Usage
import.bedo(path)
Arguments
path |
a character, location on disc (full path) |
Details
Positions are 1-based, not 0-based as .bed. export with export.bedo
Value
GRanges object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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