importGtfFromTxdb: Import the GTF / GFF that made the txdb
In JokingHero/ORFik: Open Reading Frames in Genomics
importGtfFromTxdb R Documentation
Import the GTF / GFF that made the txdb
Description
Import the GTF / GFF that made the txdb
Usage
importGtfFromTxdb(txdb, stop.error = TRUE)
Arguments
txdb
a TxDb, path to txdb / gff or ORFik experiment object
stop.error
logical TRUE, stop if Txdb does not have a gtf.
If FALSE, return NULL.
Value
data.frame, the gtf/gff object imported with rtracklayer::import.
Or NULL, if stop.error is FALSE, and no GTF file found.
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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| importGtfFromTxdb | R Documentation |
Import the GTF / GFF that made the txdb
Description
Import the GTF / GFF that made the txdb
Usage
importGtfFromTxdb(txdb, stop.error = TRUE)
Arguments
txdb |
a TxDb, path to txdb / gff or ORFik experiment object |
stop.error |
logical TRUE, stop if Txdb does not have a gtf. If FALSE, return NULL. |
Value
data.frame, the gtf/gff object imported with rtracklayer::import. Or NULL, if stop.error is FALSE, and no GTF file found.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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