makeExonRanks: Make grouping by exons ranks
In JokingHero/ORFik: Open Reading Frames in Genomics
View source: R/ranges_helpers.R
makeExonRanks R Documentation
Make grouping by exons ranks
Description
There are two ways to make vector of exon ranking:
1. Iterate per exon in ORF, byTranscript = FALSE
2. Iterate per ORF in transcript, byTranscript = TRUE.
Usage
makeExonRanks(grl, byTranscript = FALSE)
Arguments
grl
a GRangesList
byTranscript
logical (default: FALSE), groups orfs by transcript
name or ORF name, if ORfs are by transcript, check duplicates.
Details
Either by transcript or by original groupings.
Must be ordered, so that same transcripts are ordered together.
Value
an integer vector of indices for exon ranks
JokingHero/ORFik documentation built on April 23, 2024, 12:37 a.m.
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View source: R/ranges_helpers.R
| makeExonRanks | R Documentation |
Make grouping by exons ranks
Description
There are two ways to make vector of exon ranking: 1. Iterate per exon in ORF, byTranscript = FALSE 2. Iterate per ORF in transcript, byTranscript = TRUE.
Usage
makeExonRanks(grl, byTranscript = FALSE)
Arguments
grl |
a |
byTranscript |
logical (default: FALSE), groups orfs by transcript name or ORF name, if ORfs are by transcript, check duplicates. |
Details
Either by transcript or by original groupings. Must be ordered, so that same transcripts are ordered together.
Value
an integer vector of indices for exon ranks
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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