matchSeqStyle: A wrapper for seqlevelsStyle
In JokingHero/ORFik: Open Reading Frames in Genomics
matchSeqStyle R Documentation
A wrapper for seqlevelsStyle
Description
To make sure chromosome naming is correct (chr1 vs 1 vs I etc)
Usage
matchSeqStyle(range, chrStyle = NULL)
Arguments
range
a ranged object, (GRanges, GAlignment etc)
chrStyle
a GRanges object, TxDb, FaFile,
, a seqlevelsStyle or Seqinfo.
(Default: NULL) to get seqlevelsStyle from. In addition if it
is a Seqinfo object, seqinfo will be updated.
Example of seqlevelsStyle update:
Is chromosome 1 called chr1 or 1,
is mitocondrial chromosome called MT or chrM etc.
Will use 1st seqlevel-style if more are present.
Like: c("NCBI", "UCSC") -> pick "NCBI"
Value
a GAlignment/GRanges object depending on input.
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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| matchSeqStyle | R Documentation |
A wrapper for seqlevelsStyle
Description
To make sure chromosome naming is correct (chr1 vs 1 vs I etc)
Usage
matchSeqStyle(range, chrStyle = NULL)
Arguments
range |
a ranged object, (GRanges, GAlignment etc) |
chrStyle |
a GRanges object, TxDb, FaFile,
, a |
Value
a GAlignment/GRanges object depending on input.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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