optimizeTranscriptRegions: Make optimized GRangesList objects saved to disc

In JokingHero/ORFik: Open Reading Frames in Genomics

Make optimized GRangesList objects saved to disc

Description

Much faster to load

Usage

optimizeTranscriptRegions(
  txdb,
  base_path = optimized_txdb_path(txdb, create.dir = TRUE),
  regions = c("tx", "mrna", "leaders", "cds", "trailers", "ncRNA")
)

Arguments

txdb	a TxDb object, ORFik experiment object or a path to one of: (.gtf ,.gff, .gff2, .gff2, .db or .sqlite), Only in the loadRegion function: if it is a GRangesList, it will return it self.
base_path	Directy and file prefix for files, will append "_region.rds", where region is specific region.
regions	character, default: c("tx", "mrna", "leaders", "cds", "trailers", "ncRNA"). Valid options specified by loadRegion.

Value

invisible(NULL)

JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.