optimized_txdb_path: Get path for optimization files for txdb

In JokingHero/ORFik: Open Reading Frames in Genomics

Get path for optimization files for txdb

Description

Get path for optimization files for txdb

Usage

optimized_txdb_path(
  txdb,
  create.dir = FALSE,
  stop.error = TRUE,
  gtf_path = getGtfPathFromTxdb(txdb, stop.error = stop.error)
)

Arguments

txdb	a TxDb object, ORFik experiment object or a path to one of: (.gtf ,.gff, .gff2, .gff2, .db or .sqlite), Only in the loadRegion function: if it is a GRangesList, it will return it self.
create.dir	logical FALSE, if TRUE create the optimization directory, this should only be called first time used.
stop.error	logical TRUE
gtf_path	path to gtf where output should be stored in subfolder "./ORFik_optimized"

Value

a character file path, returns NULL if not valid and stop.error is FALSE.

JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.