orfID: Get id's for each orf
In JokingHero/ORFik: Open Reading Frames in Genomics
orfID R Documentation
Get id's for each orf
Description
These id's can be uniqued by isoform etc,
this is not supported by GenomicRanges.
Usage
orfID(grl, with.tx = FALSE)
Arguments
grl
a GRangesList
with.tx
a boolean, include transcript names,
if you want unique orfs, so that they dont have duplicates
from different isoforms, set it to FALSE.
Value
a character vector of ids, 1 per orf
See Also
Other ORFHelpers:
defineTrailer(),
longestORFs(),
mapToGRanges(),
startCodons(),
startSites(),
stopCodons(),
stopSites(),
txNames(),
uniqueGroups(),
uniqueOrder()
JokingHero/ORFik documentation built on Oct. 21, 2024, 11:42 a.m.
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| orfID | R Documentation |
Get id's for each orf
Description
These id's can be uniqued by isoform etc, this is not supported by GenomicRanges.
Usage
orfID(grl, with.tx = FALSE)
Arguments
grl |
a |
with.tx |
a boolean, include transcript names, if you want unique orfs, so that they dont have duplicates from different isoforms, set it to FALSE. |
Value
a character vector of ids, 1 per orf
See Also
Other ORFHelpers:
defineTrailer(),
longestORFs(),
mapToGRanges(),
startCodons(),
startSites(),
stopCodons(),
stopSites(),
txNames(),
uniqueGroups(),
uniqueOrder()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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