removeORFsWithStartInsideCDS: Remove ORFs that have start site within the CDS
In JokingHero/ORFik: Open Reading Frames in Genomics
removeORFsWithStartInsideCDS R Documentation
Remove ORFs that have start site within the CDS
Description
Remove ORFs that have start site within the CDS
Usage
removeORFsWithStartInsideCDS(grl, cds)
Arguments
grl
(GRangesList), the ORFs to filter
cds
(GRangesList), the coding sequences (main ORFs on transcripts),
to filter against.
Value
(GRangesList) of filtered uORFs
See Also
Other uorfs:
addCdsOnLeaderEnds(),
filterUORFs(),
removeORFsWithSameStartAsCDS(),
removeORFsWithSameStopAsCDS(),
removeORFsWithinCDS(),
uORFSearchSpace()
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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| removeORFsWithStartInsideCDS | R Documentation |
Remove ORFs that have start site within the CDS
Description
Remove ORFs that have start site within the CDS
Usage
removeORFsWithStartInsideCDS(grl, cds)
Arguments
grl |
(GRangesList), the ORFs to filter |
cds |
(GRangesList), the coding sequences (main ORFs on transcripts), to filter against. |
Value
(GRangesList) of filtered uORFs
See Also
Other uorfs:
addCdsOnLeaderEnds(),
filterUORFs(),
removeORFsWithSameStartAsCDS(),
removeORFsWithSameStopAsCDS(),
removeORFsWithinCDS(),
uORFSearchSpace()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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